Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3054 ATGGCACCCAATCCAAAAGTTGCAGCAGCCTATCGTGCAATGACAAATCTTGGGATTCAGGAAACAAAAGTGAAACCAGTATTGAAGAAACTTCTTAAGTTGTACGATAAGAACTGGGAACTTATTGAAGAAGAGAACTATAGAGCTCTGGCTGATGCTATATTTGAGGAAGAGGAAAATGTGTTGCAGGGAAAGAGAAAAAAATGCAACGACGTTGATGAAGGAGAGATGGGGGATGAAGAAGCCCAGATGCAGGATGAGCAAGTGCGACCTTTGAAGAGGTTGCGTTTAAGAGGCCAAGATAGTCAGGCTTTGCATCCTCCGAGTCTTTGTGGAACCAGCTCAGTTGCCTCGCCATCTAAAAGGCCTAAAATAGAAGATGACACAATACCTGAAAGTTGTTCCAGCCAGCAGCCTCAAAACATGGCAATGTCATCTCAGTCTGATAGAAATGGAGAGACTGAAGTTTGCCCTGTTCCAATGAGAGATAGTATTGTTGACAAGGGAAAGCAACCTTTATCACCTCAAGTTGCTCCCAGAGGAAGAAGACTTATATATGAAAGAGTGCCCCCAGTAGTTGCACTTAAAGAATCGACAGCTGAACGGGGAATTGTACCATTACAGACAAACAAAATGCCTCAGATTCATGCATTAATAAAGCCCAAGGATGAGCCTGTTGATGACCTGGTAGATTATGAGGTTCCTATTTCAACCATTCATCCTGAACCGCCGAGTGGAAGAGACTCTGCAAGGAAGAATGATGCAACTAGGAAACAAGATGGTAATGGTCCTTTGGTGTCAAAATGCAGAGGTGAAGGGAGAGGTGATGATATACGTGATTCGTCAAATGATGAAGCGAACCATGAGGTTGTGACAAACCGAGAGCGTTCTACTACCATAGAAATAGCATCCTCAACATCAGGAGAGGTAAAAATTTCTATGAGCTGCAGTTCAGCTCTTGGGAGATCAGATTTTCGTTTGCCTAGTCGAGATCAACTTTTAAAAATGATGGAGGATAAATGTCTGCGATCATATAAAATCAATGACCCAAATTTTTCTGTCATGAAACTGTTGAGAGATATGTGTGACTGCATGCTGGAATTCGGAACTGATTCAAATGATGACTCACAGGAAGGATCTAAAATGATCAGACCAAGTCTTAATGTGTTGAAGGAATCTAAGGCATGTGATGTCAAAGGCAATGCAGAAGATATGGGCATGCATTCTGGCACTTCAAATGAATCAATCAATGTTCAGGGTTCAGCTGCCTTGGTTGCATCTCACATTTCTATTTCTCCTCGTCTGAGTGGTATGGATGATTCTGTACATGTTACCAAGAAGGTCAGAACAAATGATCTTCCAGGATGTGATGGCGGAAAGGGACTGGAGGATCCTATATCTCCAAATTCAGGTAGTTTAATTGTTGCTCAACAGCATCAGCTTACTCCTGATGATCTAAGGTCTCTTCATGGTGTTGATGACCTTTCAAAAGGAGAAGAAAATATCAGAATTCCATGGGTAAATAATTCTACAAATGATTTCCCGCCACCTTTTCACTATATACACCAAAGCATTGGGTTCCGAGAGGCTTATGTTAAATTTTATCTTTCAAACATCGGGTGTGAGGATTACTGTTCAAATTGTTTAGGCAATTGTCTTTTGTCATTGACACCTTGTGCTTGCGCAAATAAAACTGGGGGTGGATATGCATACACTTCTGAAGGCCTAGTGAAAGAAGAGTTCTTGGAAGAGTGTATTACCATTAGCCGTAACCCTCAACAACATCAGTTCCATTGTAAAGACTGCCCACTTGAAAGAGCAAAGAATGATGATTCTTTAGAACCATGTAAAGGACACTTAAAGAGAAAGTTTATCAAAGAATGTTGGATAAAATGTGGCTGTGTGAAACAGTGTGGCAATCGTGTTATCCAGCGAGGAATCACATACAACTTGGAGGTGTTTTTTACTTCTGAAGGAAAAGGATGGGGTCTTCGTACCTTGGAGGAGCTGCCAAAAGGTGCATTTGTGTGTGAGTTTGTTGGAGAAATATTAACCATCAAAGAGTTGCTTGAGAGGAACATGCAATGCACCAAAAATGGGACATATAAATACCCCATCATATTAGATGCAGATTGGGATTCAGGGGTCGTGAAGGGTAAAAAAGCTCTTTGCTTGGATGCAGCGTGTTATGGGAATGTTGCTAGGTTTATTAATCACAGATGTTTGGATGCGAACTTGATCGAGATCCCAGTTGAAGTTGAAACCCCAAATCATCACTACTATCATCTTGCCTTTTTCACATCCAGAAAAATAGCTGCTCTGGAAGAGCTCACTTGGGATTATGGCATTGACTTTGATGACAATGAGGGTCCTCTCAAGCCATTCTGTTGCAGATGTGGCAGTAAGTTCTGCCGGAAGATGAAGCGATCGAATAATATTCTGTTTGTCTTGTTCTTTTGCTTGGTTGTGTCTATCTGTGTGGCTGGAAAGGCCCTGCTTTTTCTAAATTGCAAGCTTTAG 2520 0.4151 MAPNPKVAAAYRAMTNLGIQETKVKPVLKKLLKLYDKNWELIEEENYRALADAIFEEEENVLQGKRKKCNDVDEGEMGDEEAQMQDEQVRPLKRLRLRGQDSQALHPPSLCGTSSVASPSKRPKIEDDTIPESCSSQQPQNMAMSSQSDRNGETEVCPVPMRDSIVDKGKQPLSPQVAPRGRRLIYERVPPVVALKESTAERGIVPLQTNKMPQIHALIKPKDEPVDDLVDYEVPISTIHPEPPSGRDSARKNDATRKQDGNGPLVSKCRGEGRGDDIRDSSNDEANHEVVTNRERSTTIEIASSTSGEVKISMSCSSALGRSDFRLPSRDQLLKMMEDKCLRSYKINDPNFSVMKLLRDMCDCMLEFGTDSNDDSQEGSKMIRPSLNVLKESKACDVKGNAEDMGMHSGTSNESINVQGSAALVASHISISPRLSGMDDSVHVTKKVRTNDLPGCDGGKGLEDPISPNSGSLIVAQQHQLTPDDLRSLHGVDDLSKGEENIRIPWVNNSTNDFPPPFHYIHQSIGFREAYVKFYLSNIGCEDYCSNCLGNCLLSLTPCACANKTGGGYAYTSEGLVKEEFLEECITISRNPQQHQFHCKDCPLERAKNDDSLEPCKGHLKRKFIKECWIKCGCVKQCGNRVIQRGITYNLEVFFTSEGKGWGLRTLEELPKGAFVCEFVGEILTIKELLERNMQCTKNGTYKYPIILDADWDSGVVKGKKALCLDAACYGNVARFINHRCLDANLIEIPVEVETPNHHYYHLAFFTSRKIAALEELTWDYGIDFDDNEGPLKPFCCRCGSKFCRKMKRSNNILFVLFFCLVVSICVAGKALLFLNCKL 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3054 839 SUPERFAMILY SET domain 501 806 IPR046341 -
Dere01g3054 839 MobiDBLite consensus disorder prediction 106 120 - -
Dere01g3054 839 MobiDBLite consensus disorder prediction 236 296 - -
Dere01g3054 839 MobiDBLite consensus disorder prediction 270 295 - -
Dere01g3054 839 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
Dere01g3054 839 Pfam SET domain 661 782 IPR001214 GO:0005515
Dere01g3054 839 SMART set_7 649 788 IPR001214 GO:0005515
Dere01g3054 839 MobiDBLite consensus disorder prediction 101 157 - -
Dere01g3054 839 CDD SET_SETDB-like 516 782 - -
Dere01g3054 839 Gene3D - 1 60 IPR043017 -
Dere01g3054 839 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 839 IPR025776 -
Dere01g3054 839 Pfam Pre-SET motif 496 641 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Dere01g3054 839 Gene3D SET domain 495 807 IPR046341 -
Dere01g3054 839 ProSiteProfiles SET domain profile. 649 782 IPR001214 GO:0005515
Dere01g3054 839 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 812 - -
Dere01g3054 839 MobiDBLite consensus disorder prediction 130 153 - -
Dere01g3054 839 SMART preset_2 492 633 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3054 Dere-ChrDere01 45080904 45087256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3054 625 807 C2H2 Transcription Factor Family AT2G23740 39.153 1.03e-27 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere01g3054 Pre-SET 1e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0274 02 2726328 2731163 Dere01g3054 01 45080904 45087256 CCT
Dere01g3054 01 45080904 45087256 Dere01g3054 01 45080904 45087256 ECH