Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3050 ATGGGAGATAGCGAAGCAGTTGCTCAAACATCTGCAGCTGTGAGCTACACTTCCGGGAGCTATACTTCAACAGGCTATACTGATGCCGTTCCAAATCCTGTTCCTGAGGCTGTTGCTACTGTTGCCACTGTTGCCGACTCTACTGCAGAGGCTCATCAGGCTAATGCAACATTTGAATTAAATTGTTCTAATTATGGAGATGGGAATGTTTATGTTGGGGACCCTAATTCTGTACTGCAACATGCCCAGTTCAGCACGGCAGACGGGACTAAGCAAACTGCTGCTAATCAGACTGCCAGTGGGAGCACATCTACAGATTTTGCTCAAGTATCTGACTATAATTCATCTGTAAATGGTGCAGTGGCAAATGCCACAGGACTTGAGAATGGGAGTGCATTGGAGACTATTGGTGGATCAGCTGATGAGAAACAGCTTGCTGATGGTTATGCTGCAATGTCTGCTGAGGAAGATCGACTATGGAATATTGTAAGAGCTAATTCTTTAGATTTTAATGCTTGGACTTCCCTGATCGAGGAAACAGAGAAAGTGGCCGAGAACAACATTTTGAAGATCCGAAAAGTTTATGATACTTTTCTAGCAGAATTTCCTTTGTGTTATGGTTATTGGAAGAAGTATGCTGATCATGAGGCTCGTCTTGGCTCTATTGATAAAGTTGTTGAAGTTTATGAACGAGCTGTTCAAGGAGTCACGTATTCAGTGGATATGTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGATCCAGACACAGTTCGTAGGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCTCTTTGGGATAAATACATTGAATATGAATACATGCAGCAGGACTGGGCCCGTCTTGCCTTGATCTATACCAGAATATTGGAGAATCCAAATCAGCAACTGGATCGGTATTTCAGCAGCTTCAAGGAGTTAGCTGGAAATCGACCTTTATCAGAATTACGTACTGCTGAAGAAGCGGTGGCAGCAGCAGCAGCAGGAGGAGAAGGTAGTGCAGTTTCAGAGGATGGTGGCCAGGCTAATGAGGGGGAGGTTCATCCTGATGGTGCGGAAAATTCTTCTAAACCTGTAAGTGCTGGCTTAACAGAAGCAGAAGAGTTGGAGAAGTATATCGCCATTAGAGAAGAGATGTATAAGAAAGCTAAAGAGTTCGATTCTAAGATCGTTGGTTTTGAAACAGCTATCAGGAGGCCCTACTTTCACGTACGGCCCCTCAATGTTGCAGAGCTTGAGAATTGGCATAATTATCTGGATTTTATAGAAAGGGAAGGTGACTTCAGCAAGGTTGTGAAATTGTATGAAAGATGTGTCATCGCATGTGCCAATTATCCTGAGTACTGGATACGGTATGTGTTATGTATGGAGGCCAGTGGAAGCATGGATCTTGCAAATAATGTGCTTGCTCGGGCAACACAGGTGTTTGTCAAGAGACAACCTGAGATACATCTTTTTTCTGCTCGGTTCAAGGAGCAGAATGGGGATTTAGTTGGTGCTCGAGCTGCCTATCAACTTGTGCATACTGAAATTTCTCCTGGTCTTCTTGAAGCAATAATCAGGCATGCAAATATGGAAAATAGACTGGGTAACTTGGAGGATGCCTACTCTTTATATGAACAGGCTATTGCCATTGAAAAAGGCAAGGAACATTCACAGACATTGCCAATGTTGTTTGCTCAGTATTCTCGGTTTGTTTATTTGGTTTCTGGGAACTCAGAAAAGGCAAGGGAGGTTCTAGTTGAGGGACTCGAGCATGTTCAGTCATTAAGGCCAGTACTTGAGGCTTTGTTACATTTTGAGGCTATTCGACCCCTACCAAAGCAAGTTGATATCAACTATTTAGATTCATTAGTTGCCAAATTCATAATTCCCAACCCTGAGAACGCAAATATTGCTAGTGCAACTGATAGGGAGGAACTTTCTGGCATTTTTCTGGAGTTCTTAAATCTTTTTGGAGATGTTCAATCCATCAAGAGAGCTGAGGATAGGCATGCCAAACTCTTCTTGCCTCATAGGAGTATGTCAGAGTTTAAAAAGCGTCATGCAGAGGATTATCTCACTTCAGATAAAGCAAAACTGGCAAGATCTTACAATGTTCCATCACCTGCCCAATCTTCGGTGAGTGCTTATCCAAACGCACAGAATCAGTGGGCTACTGGTTATGGAGTGCAACCTCAAACTTGGCCACCAGTCACACAAGCACAGGGACAACAATGGGCTGCCAGTTACACCCAGCAGGGTGCCTATGGGGCTTATGCTGGATATGGGGGCAGTTACGCTAATTCACAGTTGGCTACGTCAGTTCCACAGAGTACTGCATACGGAGCCTACCCTCCTGCCTATCCTGTACAGACAGCACTTCCTCAACCGAATTATGTGCAATCTGCTGCGGCCCCTGCCCTGCAATCTGCTGCAGCTCCTCAGGCCTATTATGGGAGTGGTTATTACTGA 2499 0.4402 MGDSEAVAQTSAAVSYTSGSYTSTGYTDAVPNPVPEAVATVATVADSTAEAHQANATFELNCSNYGDGNVYVGDPNSVLQHAQFSTADGTKQTAANQTASGSTSTDFAQVSDYNSSVNGAVANATGLENGSALETIGGSADEKQLADGYAAMSAEEDRLWNIVRANSLDFNAWTSLIEETEKVAENNILKIRKVYDTFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLALIYTRILENPNQQLDRYFSSFKELAGNRPLSELRTAEEAVAAAAAGGEGSAVSEDGGQANEGEVHPDGAENSSKPVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIVGFETAIRRPYFHVRPLNVAELENWHNYLDFIEREGDFSKVVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANNVLARATQVFVKRQPEIHLFSARFKEQNGDLVGARAAYQLVHTEISPGLLEAIIRHANMENRLGNLEDAYSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLVSGNSEKAREVLVEGLEHVQSLRPVLEALLHFEAIRPLPKQVDINYLDSLVAKFIIPNPENANIASATDREELSGIFLEFLNLFGDVQSIKRAEDRHAKLFLPHRSMSEFKKRHAEDYLTSDKAKLARSYNVPSPAQSSVSAYPNAQNQWATGYGVQPQTWPPVTQAQGQQWAASYTQQGAYGAYAGYGGSYANSQLATSVPQSTAYGAYPPAYPVQTALPQPNYVQSAAAPALQSAAAPQAYYGSGYY 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3050 832 Gene3D Tetratricopeptide repeat domain 421 716 IPR011990 GO:0005515
Dere01g3050 832 SMART hat_new_1 255 290 IPR003107 GO:0006396
Dere01g3050 832 SMART hat_new_1 220 252 IPR003107 GO:0006396
Dere01g3050 832 SMART hat_new_1 186 218 IPR003107 GO:0006396
Dere01g3050 832 SMART hat_new_1 441 473 IPR003107 GO:0006396
Dere01g3050 832 SMART hat_new_1 292 325 IPR003107 GO:0006396
Dere01g3050 832 MobiDBLite consensus disorder prediction 343 375 - -
Dere01g3050 832 Coils Coil 530 557 - -
Dere01g3050 832 Gene3D Tetratricopeptide repeat domain 161 328 IPR011990 GO:0005515
Dere01g3050 832 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 420 712 - -
Dere01g3050 832 FunFam Putative pre-mrna-processing factor 39 161 331 - -
Dere01g3050 832 SUPERFAMILY TPR-like 163 323 IPR011990 GO:0005515
Dere01g3050 832 SUPERFAMILY TPR-like 385 689 IPR011990 GO:0005515
Dere01g3050 832 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 143 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3050 Dere-ChrDere01 45030510 45040875 Dispersed/Wgd