Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3047 ATGTGGACGCACGTAAGCAAACTTCTCTACCATCTCTCCACCTCCTCAGGATTGGATTCCCAAATGGGTGAACTTGAAAAGCCATCAAATATTTCAATATTTGAAAGAAGCATGAAGAAGAATAAGATGCAATTGAAAACTCTGCTCATCTTCTTCTTCTTCCACTTCTGTTATATTTCTTGTTTCCCACATGGTCTTGCAGCTGCTGTGAATGATGACGTTTCTGCTTTACTTTCTATAAAAGCAGGTCTTATTGATCCGTTGAATAAGCTGCAAGATTGGAAATTGTGGGACAAAGCACCGGCGAAAGATGTAGCTCATTGTAACTGGACTGGTGTCTTGTGCAATTCTGCTGGAGCTGTTGAGAAGCTTGATCTATCCCACATGAATCTCAGTGGTAAAGTATCCGATGAGATACAAAAACTACGCAGTCTTACATCTCTGAACTTGTGCTGCAATGGGTTCTCCACAACATTGCCAAAATCTGTAGCCAACCTCACCACATTGAGAAGTCTTGATGTTAGCCAGAATTTCTTCATTGGTGATTTTCCAATAGGTCTTGGAAAGGCATCACGACTTATGATTTTAAATTCATCCAGCAATGATTTCTCAGGTTTTGTTCCTGAGGACCTTGGAAATGCTTCTTCCTTAGAGACGCTGGATCTCAGAGGCAGCTTCTTCCAAGGGTCTATTCCAAAATCCCTCTGTAGCTTGCGGAAGTTGAGGTTCCTTGGTCTTTCCGGGAATAATCTCACTGGAAAATTTCCAGAAGGTCTGGGGCGACTTTCCTCACTGGAGTATATAATTCTTGGGTACAATGCATTTGAAGGTGGGATTCCAGCAGAGTTTGGAAATCTTACCAATCTCAAGTATCTTGATATTGCAGAAGGCAATCTTGGAGGTGAGATTCCAGCTGAATTGGGAAACCTGAAGTTGCTAAACACAGTTTTCTTATACAAGAACAATTTTGAAGGTAAAATCCCACCAGCTGTGGGCAACATGACTTCACTACTGTTGCTGGATCTCTCTGACAATGTACTATCAGGAAAAATTCCACCTGAAATAAGTCAACTAAAGAATTTAGAACTCCTAAATTTCATGAGCAACAAGCTATCTGGTCCTGTGCCTTCTGGCCTTGAGGATTTACCTCAATTGAAGGTGCTTGAGCTATGGAACAATTCCTTGTCAGGGACATTGCCAACTTACCTTGGCAAGAGCTCACCATTGCAGTGGCTTGATGTATCATCCAACTCAATCTCTGGCGAGATTCCCAGTACACTTTGCAGCCAGGGCAATCTCACCAAGCTTATTCTTTTCAATAATGCCTTCTCAGGTCCAATCCCAGTTAGCCTATCAACATGTCCTTCACTAGTTCGTGTTCGAATTCATAACAATTTTTTTACTGGGACGATTCCGGGGGGTTTTGGGAAGCTTGGGAATCTTGAAAGGTTAGAATTTGCTAACAATAGTCTCACTGGTGAAATTCCTGATGATATTGCTTCTTCCACATCTCTTTCTTTCATTGATTTCTCCAGAAACAACCTCCATTCTTCTCTCCCTTCCACCATTCTTTCCACTCCAAATCTGCAATCGTTCGTGGTCTCCCACAACAATTTGATTGGTGAAATCCCAGAACAATTCCAGGACTGTCCTTCTCTTACTGTGCTTGATCTCTCATCAAATCAGCTCTCTGGAAGCATTCCAGCGAGCATTGCTTCTTGTCAGAAATTGGTAAACTTGAACCTAAAGAACAACCAATTGACCGGGGAAATCCCAAAAGCACTAGCCACCATGCCTTCATTGGCCATTCTTGATTTTTCCAATAACTCCCTGACTGGTCAAATCCCTGATAGCTTTGGTCTTTCTCCAGCTCTGGAAGCACTCAATGTCTCATACAACAAGCTTGAGGGTCCTGTCCCAACAAATGGCATGCTGAGAACAATAAACCCAAGTGATCTTGCGGGTAATGCTGGCCTATGTGGTGGTGTCCTTCCTCAATGTGGCCAAAGCTCTGCATATGCATTAAGGCATAGGAGCTCACAAGCCAAGCACATAATCACAGGATGGATCATTGGAATATCATCAGTCTTGACCATTGGGATTGCCATTTTGGTTGCTAGATCTATATACATAAGGTGGTACACTGTTGGCTTCTGCATTCGAGAAAAAATTTATAAGGGTGACAAAGGGTGGCCCTGGAGATTGATGGCATTTCAGAGGCTTAATTTTAAAAGTACTGAAATTCTAGCTTGCATCAGGGAAACAAATGTGATTGGAATGGGAGCAACTGGGGTTGTTTACAAGGCGGAAATGCCGCAGTCAAATACAGTTGTAGCAGTGAAAAAGTTGTGGAGATCAGGATCTGATATTGAAGTAGGAACTAGTGATGACCTTGTTGGAGAGGTGAATCTCTTGGGCAGGCTGAGACATAGAAATATTGTTAGACTATTAGGATATCTTTATAATGACTCTGATGTGATGATAGTTTATGAATTTATGCACAATGGCAACCTTGGAGATGCCTTACATGGCAAACAAGCTGGAAGGTTGCTTGTAGACTGGGTTTCTCGTTATAACATAGCACTAGGAATTGCTCAAGGGCTTGCTTATCTTCATCATGACTGTCATCCACCTGTCATCCATCGAGACATCAAGTCAAATAACATACTGCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTTGGGTTAGCCAAAATGATGATTAGGAAGAATGAAACAGTCTCCATGGTTGCTGGGTCCTACGGCTACATTGCTCCTGAATATGGATACACCTTGAAGGTGGATGAAAAGATTGACATTTACAGCTACGGAGTAGTTCTGTTAGAGCTTCTCACAGGAAAGAGGCCTATAGATTCTGAGTTGGGAGAATCTGTAGACATTGTAGAGTGGATTAGGAGGAAGACTAGAGACAACAAGTCTCTAGAAGAAGTATTAGACCCAAGCGTAGGAAACTGCAGGCATGTTCTAGAAGAGATGCTTATAGTTCTCAGAATAGCACTTCTTTGCACTGCCAAGCTCCCCAAGGACAGACCCTCCATGACAGATGTGATAATGATGCTTGAAGAGGCAAAGCCTCGTAGAAAAAGCAATAGCAACAATGAAAAACTTGCAGCTAATAAGGAGATGCCTCCTGTTAGCTCATCATCACCAAGTAATGGCCTCTTGTAG 3192 0.4236 MWTHVSKLLYHLSTSSGLDSQMGELEKPSNISIFERSMKKNKMQLKTLLIFFFFHFCYISCFPHGLAAAVNDDVSALLSIKAGLIDPLNKLQDWKLWDKAPAKDVAHCNWTGVLCNSAGAVEKLDLSHMNLSGKVSDEIQKLRSLTSLNLCCNGFSTTLPKSVANLTTLRSLDVSQNFFIGDFPIGLGKASRLMILNSSSNDFSGFVPEDLGNASSLETLDLRGSFFQGSIPKSLCSLRKLRFLGLSGNNLTGKFPEGLGRLSSLEYIILGYNAFEGGIPAEFGNLTNLKYLDIAEGNLGGEIPAELGNLKLLNTVFLYKNNFEGKIPPAVGNMTSLLLLDLSDNVLSGKIPPEISQLKNLELLNFMSNKLSGPVPSGLEDLPQLKVLELWNNSLSGTLPTYLGKSSPLQWLDVSSNSISGEIPSTLCSQGNLTKLILFNNAFSGPIPVSLSTCPSLVRVRIHNNFFTGTIPGGFGKLGNLERLEFANNSLTGEIPDDIASSTSLSFIDFSRNNLHSSLPSTILSTPNLQSFVVSHNNLIGEIPEQFQDCPSLTVLDLSSNQLSGSIPASIASCQKLVNLNLKNNQLTGEIPKALATMPSLAILDFSNNSLTGQIPDSFGLSPALEALNVSYNKLEGPVPTNGMLRTINPSDLAGNAGLCGGVLPQCGQSSAYALRHRSSQAKHIITGWIIGISSVLTIGIAILVARSIYIRWYTVGFCIREKIYKGDKGWPWRLMAFQRLNFKSTEILACIRETNVIGMGATGVVYKAEMPQSNTVVAVKKLWRSGSDIEVGTSDDLVGEVNLLGRLRHRNIVRLLGYLYNDSDVMIVYEFMHNGNLGDALHGKQAGRLLVDWVSRYNIALGIAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIRKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKRPIDSELGESVDIVEWIRRKTRDNKSLEEVLDPSVGNCRHVLEEMLIVLRIALLCTAKLPKDRPSMTDVIMMLEEAKPRRKSNSNNEKLAANKEMPPVSSSSPSNGLL 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3047 1063 PRINTS Leucine-rich repeat signature 553 566 - -
Dere01g3047 1063 PRINTS Leucine-rich repeat signature 598 611 - -
Dere01g3047 1063 FunFam MDIS1-interacting receptor like kinase 1 837 1047 - -
Dere01g3047 1063 Pfam Leucine rich repeat N-terminal domain 71 116 IPR013210 -
Dere01g3047 1063 Pfam Protein kinase domain 754 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3047 1063 Pfam Leucine rich repeat 527 587 IPR001611 GO:0005515
Dere01g3047 1063 Pfam Leucine rich repeat 455 515 IPR001611 GO:0005515
Dere01g3047 1063 SUPERFAMILY Protein kinase-like (PK-like) 748 1029 IPR011009 -
Dere01g3047 1063 Gene3D Phosphorylase Kinase; domain 1 752 836 - -
Dere01g3047 1063 ProSiteProfiles Leucine-rich repeat profile. 552 574 IPR001611 GO:0005515
Dere01g3047 1063 Gene3D Ribonuclease Inhibitor 70 234 IPR032675 -
Dere01g3047 1063 ProSitePatterns Protein kinases ATP-binding region signature. 758 782 IPR017441 GO:0005524
Dere01g3047 1063 SMART LRR_typ_2 142 166 IPR003591 -
Dere01g3047 1063 SMART LRR_typ_2 598 621 IPR003591 -
Dere01g3047 1063 SMART LRR_typ_2 550 574 IPR003591 -
Dere01g3047 1063 SMART LRR_typ_2 478 502 IPR003591 -
Dere01g3047 1063 SMART LRR_typ_2 334 358 IPR003591 -
Dere01g3047 1063 SMART LRR_typ_2 382 406 IPR003591 -
Dere01g3047 1063 SMART LRR_typ_2 238 262 IPR003591 -
Dere01g3047 1063 ProSiteProfiles Protein kinase domain profile. 752 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3047 1063 Gene3D Ribonuclease Inhibitor 246 313 IPR032675 -
Dere01g3047 1063 Gene3D Ribonuclease Inhibitor 314 379 IPR032675 -
Dere01g3047 1063 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 409 671 - -
Dere01g3047 1063 FunFam MDIS1-interacting receptor like kinase 1 752 836 - -
Dere01g3047 1063 ProSitePatterns Serine/Threonine protein kinases active-site signature. 879 891 IPR008271 GO:0004672|GO:0006468
Dere01g3047 1063 SMART serkin_6 752 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3047 1063 Gene3D Transferase(Phosphotransferase) domain 1 837 1053 - -
Dere01g3047 1063 MobiDBLite consensus disorder prediction 1029 1063 - -
Dere01g3047 1063 PANTHER UNNAMED PRODUCT 221 961 - -
Dere01g3047 1063 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 70 225 - -
Dere01g3047 1063 SUPERFAMILY L domain-like 69 349 - -
Dere01g3047 1063 Gene3D Ribonuclease Inhibitor 380 674 IPR032675 -
Dere01g3047 1063 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 226 326 - -
Dere01g3047 1063 SUPERFAMILY RNI-like 301 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3047 Dere-ChrDere01 45005337 45010398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3047 34 543 Receptor kinase-like Gene Family AT1G08590 28.918 2.02e-55 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere01g3047 Pkinase 5.6e-47 CL0016