Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3044 ATGGCTATCTCCCAATTGCTCAATAAAATCTCTGCTTCATCATTACCATCAGGATCGCCGACCACCCTTTTGAGAACGATCCTAGGATTGTCCGTGTTGGAATTAGCGGCAATCTGCGTCAACTTGACTATTCTTCTCGTGTTTCTCTCTGTAATCTCAGCGAGACGGATATTCGTGTGTGTTGGTCGAATTCGGATAAGCAAGGACAATACAACTGGCAATCCAAATCCAACTCGTAATAGTATTATTGATGGAGAAATACGTGACGTTAGAATCGGTACCAGTTTCAAATTGTCATTGTTGTGTTGTTTCTATGTGCTCTTTGTGCAAGTTTTGGTGATAGGATTCGATGCAGCTGCTTTGATCAGAGGAGCGACTGATGGGAAGATTGAGAACTTGTCGCTTCTTTCTTTGCCATCTGCACAGGGTATAGCTTGGTTTGTAATAAGCTTCTCTGCCTTGCATTGCAAATTCAAGGTGTCCGAGAAGTTTCCGTTGTTGTTAAGGATTTGGTGGTTTGTCTCATTTGTGATTTGTTTGTGTACTTTGTACGTTGATGGGAGAGTACTTTTGGTGGAAGGTTCAAAACATCTTTGCTCTCATGTTGTGGCAAATTTTGCTGTCACTCCAGCTCTTGCTTTTCTGTGTTTTGTTGCAATTCGAGGTGTTACTGGCATACAAGTTTGTAGAAACTCTGATCTTCAAGAGCCATTACTTTTTGAAGAAGAAGAAGAAGAAGCAGGGTGTCTCAAGGTTACTCCTTACAGTGATGCCGGGCTTTTTAGCTTGGCCACTCTCTCTTGGCTAAACCCACTTCTTTCCACTGGTGCAAAGAGACCGCTTGAGCTTAAGGACATTCCCCTTCTTGCACCAAAAGATCGAGCTAAGACCAATTATAAGATTTTAAACTCTAACTGGGAGAGATTGAAGGCTGAAAATCCTTCTAAGCAACCTTCGCTAGCTTGGGCAATTCTCAAGTCGTACTGGAAGGAGGCAGCTTGTAATGCCATCTTTGCTGGCATGAATACTCTTGTCTCATATGTAGGTCCATCCATGATCAGTTACTTCGTTGATTACTTAGGTGGTAAGGAGACTTTCCCGTATGAAGGGTATATCCTTGCAGGAACATTCTTTGCTTCAAAGCTTGTGGAGACCTTAACAACAAGGCAGTGGTATCTGGGGGTGGACATCTTGGGTATGCACGTTAGGTCAGCTCTAACAGCAATGGTATATCAAAAGGGACTCAGACTCTCAAGCTCGGCCAAACAAAGTCACACAAGTGGGGAGATTGTTAACTACATGGCTGTGGATGTTCAGAGGGTAGGGGACTACTCTTGGTATCTTCATGACATGTGGATGCTTCCTCTACAAATTATTCTTGCCCTTGCAATTTTGTACAAGAATGTTGGACTTGCTTCAATTGCGACATTAATTGCTACAATCATATCCATTGTTGTCACTGTTCCCGTGGCTAGAATACAAGAAAATTTTCAAGACAAATTAATGGCTGCTAAGGATGAAAGAATGAGAAAAACATCTGAGTGCCTGAGGAATATGAGGATCCTCAAGCTGCAAGCTTGGGAAGATAGATATCGAATAAAATTGGAAGAGATGCGTGGAGTAGAGTTCAAGTGGCTCCGGAAAGCCCTCTATTCTCAGGCTTTCATTACTTTCATCTTTTGGAGCTCCCCTATATTTGTTTCGGCTGTCACTTTTGGCACTTCGATATTGTTGGGGGGTGAGTTGACTGCAGGTGGAGTTCTTTCTGCTCTGGCTACTTTCAGGATCCTCCAAGAACCTTTGAGAAATTTTCCTGACTTGGTATCGACAATGGCCCAGACAAAAGTTTCTCTTGATCGCATATCTAGTTTCCTGCTAGAGGAAGAATTGCAAGAAGATGCAACTACCATCTTGCCACGTGGAGTTTCTGACATTGCCATAGAGATTAAGGACGGAATCTTCTGCTGGGACCCTTCTTCTAGGCCTACTTTATCAGGGATACATATGAAAGTTGAAAGGGGGATGCGTGTGGCCGTTTGCGGCATGGTTGGTTCTGGAAAATCAAGTTTCCTTTCTTGCATTCTTGGAGAGATTCCAAAGCTTTCTGGTGAAGTGACGGTGTGTGGCTCTGCCGCATATGTCTCCCAATCAGCATGGATACAGTCGGGAAATATAGAAGAAAATATCCTCTTTGGAAGCCCAATGGATAAAGCAAAGTACAAGAGAGTTCTTCATGCTTGTTCACTGAAGAGGGACCTGGAACTTTTCTCTCATGGAGACCAAACAATTATAGGTGATAGAGGTATAAACCTGAGTGGAGGCCAGAAGCAGCGGGTCCAGCTTGCACGAGCTCTTTACCAAGACGCTGATATTTATCTCCTTGATGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCAGAATTGTTTAGGGAGTACATATTGACAGCATTAGCAGATAAAACAGTTATTTTCGTGACCCATCAAGTGGAATTTCTCCCTGCAGCTGATATGATACTGGTTCTTAAAGAAGGCCGCATCATTCAGGCAGGAAAATATGATGATCTTTTACAAGCAGGAACAGATTTTAATACTCTAGTTTCGGCACACCATGAAGCCATTGAGGCTATGGATATCCCTAATCACTCTGAAGATTCAGATGAAAACTTGTCCTTGGATGCATCTGTTATGGCCAGTAAGACATCCATTGTATCTGCAAATGATATTGACAGCCTGGCCAAGGAAGTGCAAGAGGGTTCGTCAGTTTCAGATCAGAAAGCAATCAAGGAGAAGAAGAAAGCAAAACGGTCTAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTAAGAGGTAGAGTCAGCATGAGGGTGTACTTGTCATACATGGCTGCAGCATATAAAGGGTTGCTAATCCCACTCATAATCATTGCACAAGCATTATTTCAGTTCCTTCAAATTGCTAGTAATTGGTGGATGGCTTGGGCAAACCCTCAAACTGAAGGAGACCAACCCAAAGTAACCCCTATGGTTCTTCTTTTGGTGTACATGGCTCTTGCCTTTGGAAGCTCTTGGTTTATATTTGTAAGGGCTGTTCTGGTAGCTACATTTGGTCTCGCAGCTGCACAGAAGCTTTTTTTGAAGATGCTTAGAAGTGTATTCCATGCACCTATGTCCTTCTTTGACTCCACTCCAGCTGGAAGGATATTGAATCGTGTATCGATTGATCAAAGCGTTGTGGATCTTGACATTCCTTTTAGACTAGGAGGGTTTGCTTCAACAACAATACAACTTATTGGCATTGTTGGTGTAATGACGGAAGTTACCTGGCAAGTTTTGCTTCTAGTTGTCCCAATGGCCGTGGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCTTCAAGGGAATTGGTTCGTATTGTAAGCATCCAGAAGTCTCCAATTATACATCTTTTTGGTGAATCAATTGCTGGGGCAGCCACAATTAGAGGTTTTGGACAAGAGAAAAGGTTCATGAAGAGAAACCTCTATCTTCTGGACTGTTTTGCACGGCCATTCTTCTGCAGTCTTGCAGCTATCGAGTGGCTCTGCCTGCGCATGGAGTTACTGTCAACCTTTGTATTTGCTTTCTGCATGATATTACTAGTGAGCTTTCCACATGGAAGTATTGATCCTAGCATGGCTGGACTTGCTGTGACATATGGCCTGAATTTAAATGCACGCCTATCACGGTGGATTCTTAGCTTTTGCAAACTTGAAAATAAAATAATATCTATTGAAAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCCCCAACTATTATTGAAGATGTTCGTCCTCCATCTGCATGGCCTGAGAATGGGACAATTAGTGTAGTTGAATTAAAGGTTCGTTACAAGGAGAATCTTCCTTTGGTACTTCGTGGAATATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTTGGACGTACTGGCAGTGGCAAATCTACTTTGATTCAGGCATTATTTCGATTGATTGAACCATCAAGTGGGAGTATCCTTATAGACAACATTGATATTTCAAGCATTGGCCTTCATGACCTCCGAAGCCGTCTGAGTATCATACCTCAAGATCCAACCTTATTTGAAGGGACCATAAGAGGCAATCTTGATCCCCTTGAAGAGCACTCAGATACAGAGATTTGGGAGGCACTAGATAAGTCTCAGCTTGGAGAGATTATCCGTCAGAAAGAGCAAAAGCTTGATACGCAAGTGCTTGAAAATGGAGATAATTGGAGCGTAGGGCAGCGGCAACTCGTTTCCCTAGGGCGGGCTTTACTTAAGCAGTCAAAAATACTTGTACTTGATGAAGCAACAGCATCGGTTGATACAGCCACTGATAATCTTATACAGAAGATCATTCGAACAGAGTTTAGAGACTGCACTGTGTGCACTATTGCACATCGTATTCCTACTGTTATTGACAGCGATCAAGTTCTGGTACTCAGTGATGGCCGAGTCGCAGAGTTTGACACACCATCACGACTATTAGAAGATAAGTCATCTATGTTTCTAAAGTTGGTGACTGAGTATTCATCAAGGTCAAGTGGCATACCAGATATTTGA 4611 0.4279 MAISQLLNKISASSLPSGSPTTLLRTILGLSVLELAAICVNLTILLVFLSVISARRIFVCVGRIRISKDNTTGNPNPTRNSIIDGEIRDVRIGTSFKLSLLCCFYVLFVQVLVIGFDAAALIRGATDGKIENLSLLSLPSAQGIAWFVISFSALHCKFKVSEKFPLLLRIWWFVSFVICLCTLYVDGRVLLVEGSKHLCSHVVANFAVTPALAFLCFVAIRGVTGIQVCRNSDLQEPLLFEEEEEEAGCLKVTPYSDAGLFSLATLSWLNPLLSTGAKRPLELKDIPLLAPKDRAKTNYKILNSNWERLKAENPSKQPSLAWAILKSYWKEAACNAIFAGMNTLVSYVGPSMISYFVDYLGGKETFPYEGYILAGTFFASKLVETLTTRQWYLGVDILGMHVRSALTAMVYQKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIILALAILYKNVGLASIATLIATIISIVVTVPVARIQENFQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFGTSILLGGELTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISSFLLEEELQEDATTILPRGVSDIAIEIKDGIFCWDPSSRPTLSGIHMKVERGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVTVCGSAAYVSQSAWIQSGNIEENILFGSPMDKAKYKRVLHACSLKRDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYILTALADKTVIFVTHQVEFLPAADMILVLKEGRIIQAGKYDDLLQAGTDFNTLVSAHHEAIEAMDIPNHSEDSDENLSLDASVMASKTSIVSANDIDSLAKEVQEGSSVSDQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMRVYLSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDQPKVTPMVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTEVTWQVLLLVVPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMILLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTIIEDVRPPSAWPENGTISVVELKVRYKENLPLVLRGISCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPSSGSILIDNIDISSIGLHDLRSRLSIIPQDPTLFEGTIRGNLDPLEEHSDTEIWEALDKSQLGEIIRQKEQKLDTQVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRTEFRDCTVCTIAHRIPTVIDSDQVLVLSDGRVAEFDTPSRLLEDKSSMFLKLVTEYSSRSSGIPDI 1536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3044 1536 FunFam ABC transporter C family member 10 316 629 - -
Dere01g3044 1536 Pfam ABC transporter 664 798 IPR003439 GO:0005524
Dere01g3044 1536 SMART AAA_5 673 854 IPR003593 GO:0016887
Dere01g3044 1536 SMART AAA_5 1316 1501 IPR003593 GO:0016887
Dere01g3044 1536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 868 IPR027417 -
Dere01g3044 1536 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1290 1524 IPR003439 GO:0005524
Dere01g3044 1536 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 255 1527 - -
Dere01g3044 1536 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 647 869 IPR003439 GO:0005524
Dere01g3044 1536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1282 1520 IPR027417 -
Dere01g3044 1536 Gene3D - 1273 1526 IPR027417 -
Dere01g3044 1536 FunFam ABC transporter C family member 3 1273 1525 - -
Dere01g3044 1536 Pfam ABC transporter 1307 1455 IPR003439 GO:0005524
Dere01g3044 1536 CDD ABC_6TM_ABCC_D1 334 621 IPR044746 GO:0140359
Dere01g3044 1536 CDD ABC_6TM_ABCC_D2 971 1265 IPR044726 GO:0140359
Dere01g3044 1536 ProSitePatterns ABC transporters family signature. 771 785 IPR017871 GO:0005524|GO:0016887
Dere01g3044 1536 FunFam ABC transporter C family member 5 934 1271 - -
Dere01g3044 1536 Pfam ABC transporter transmembrane region 973 1215 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g3044 1536 Pfam ABC transporter transmembrane region 337 601 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g3044 1536 FunFam ABC transporter C family member 5 632 878 - -
Dere01g3044 1536 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 973 1243 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g3044 1536 SUPERFAMILY ABC transporter transmembrane region 970 1270 IPR036640 GO:0005524|GO:0016020
Dere01g3044 1536 CDD ABCC_MRP_domain2 1288 1508 - -
Dere01g3044 1536 Gene3D - 642 874 IPR027417 -
Dere01g3044 1536 Coils Coil 292 312 - -
Dere01g3044 1536 Coils Coil 928 948 - -
Dere01g3044 1536 SUPERFAMILY ABC transporter transmembrane region 322 627 IPR036640 GO:0005524|GO:0016020
Dere01g3044 1536 Gene3D ABC transporter type 1, transmembrane domain 932 1271 IPR036640 GO:0005524|GO:0016020
Dere01g3044 1536 Gene3D ABC transporter type 1, transmembrane domain 303 630 IPR036640 GO:0005524|GO:0016020
Dere01g3044 1536 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 336 613 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g3044 1536 CDD ABCC_MRP_domain1 647 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3044 Dere-ChrDere01 44981812 44988485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3044 647 862 Calmodulin-binding Proteins AT2G36910 30.638 2.13e-19 93.6