Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3033 ATGGTTTCTGTCAGTCCTATAGTTGGATCCCATGTTTGGGTGGAGGATCCTGATGTAGCTTGGATAGATGGTGAGGTTTTGGAGGTTAATGGAGAAGAAATCAAAGTCCTTTGTAGTTCTGGAAAGACGGTTGTTGTTAAATCTTTACATACTTATCTGAAAGATAACGAAGCTCCACCATGTGGAGTGGACGATATGACAAAGCTTGCTTATCTGCATGAGCCCGGAGTCCTTGACAATCTGAGATCAAGATATGACATCAATGAAATTTATACTTACACTGGGAATATATTGATTGCTGTGAATCCTTTCACAAAGCTTCCGCATTTATATGATGGCCATATGATGGCACAATACAAAGGGGCTGCTTTTGGTGAGCTGAGTCCTCATCCCTTTGCAGTTGCAGATGCTGCATATAGGCTTATGATAAATGAGGGAATCAGTCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGTAAAACAGAAAGCACTAAGTTACTCATGCGTTATCTTGCTTACATGGGAGGGAGAGCTGCAGCTGAAGGTAGGACTGTTGAGCAGCAAGTCCTAGAGTCTAATCCTGTTTTGGAAGCCTTTGGCAATGCAAAGACTGTTAGGAATAATAATTCAAGCCGCTTTGGTAAGTTTGTGGAGATTCAATTTGATCAGCAAGGAAGAATTTCAGGAGCTGCTATCAGAACTTATTTGCTGGAAAGATCACGGGTTTGCCAGGTTTCTGATCCAGAGAGGAATTATCACTGTTTCTACATGCTTTGTTCGGCACCTCCAGAGGATGTTCAGAAGTATAAATTGGGAAATCCAAGAATGTTTCATTATCTAAATCAATCAAACTGCTATGAGTTGGAAGGGATTGATGATTCTAAAGATTATATTACAACAAGGAGAGCAATGGACATTGTTGGAATAAGTTCTGAGGAGCAGGATGCCATATTCCGAGTGGTTGCCGCAATTTTGCATCTTGGTAATATTGAATTTGCAAAGGGGAAGGAAATAGACTCATCTATTCCAAAAGATGAAAAATCTCGGTTCCATCTACAAACTGCTGCTGAGCTTTTCATGTGTGATGCAAAAGCGCTAGAAGATTCTCTTTGCAAACGTGTAATTGTTACTCGTGATGAAACAATCACAAAGTCACTGGATCCAGAAATTGCGGCTCTCAGCCGAGATGCTTTGGCTAAGATTGTGTACTCGAGGTTGTTTGACTGGCTGGTGGATAAGATTAATATTTCCATTGGCCAAGACCCTGAGTCAAAGTTCTTAATTGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGCTTTGAGCAATTTTGTATTAATTTGACCAATGAGAAGCTTCAGCAACATTTTAATCAGCATGTGTTTAAAATGGAACAAGAAGAATACAAAAAAGAGGAAATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTGGATCTCATTGAAAAGAAGCCTGGAGGCATTATTGCTCTTTTGGATGAAGCTTGTATGTTTCCCAGATCAACGCATGAAACTTTTGCTCAAAAGCTGTATCAGACATTCAAAAATCATAGAAGATTCAGCAAGCCCAAATTGTCGCGTAGTGACTTCACAATTAGCCATTACGCTGGTGATGTTACATATCATACTGAATTGTTCCTGGACAAGAACAAAGATTATGTTGTTGCTGAACAACAGGCACTTCTTGGGGCTTCAAAATGCCCCTTTGTATCAGGTTTGTTCCCCCCATCAACTGAGGATTCATCCAAACAATCAAAGTTCTCTTCAATAGGTTCACGGTTCAAGAATCAATTGCAAGCTTTACTTGAAATTCTCAGTGCCACTGAGCCACACTACATTCGATGTGTAAAACCCAATAATTTTCTTAAGCCCGCAATCTTTGAAAACAAAAATGTTTTGCTGCAACTGCGCTGTGGGGGAGTTATGGAGGCAATTAGGATAAGTTGTGCTGGATATCCCACTAGAAAAACCTTTGATGAATTTGTGGATCGATTTGGCCTTCTTGCAGCTGAAGCTTTGGATGGAAGTTGTGATGAGATCACTGCTTGCAAGAGGATTCTACATAAGGTTGGGCTTAAAGGCTATCAGATTGGTAAAACAAAGGTATTTCTTCGAGCTGGTCAAATGGCAGAACTAGACACCTGTAGAAGCGAGGTCTTAGGAAAGTCAGCGAGCATTATCCAAAGGAAAGTTCGCTCCTTTTTGGCCCGCCGAACGTTTGTCTTACTTTGTTTATCTGCTACACGGATTCAAGCTGCATGCAGAGGACAACTTGATCGTCAAGTCTACAGAGGAATGCAGCGGGAAGCTTTGAGTCTTATGATTCAGAGGTGTTTCCGTATGCATTTTGCGTGGAAGGCATACAACGAATTGCATGCCTCTGCTGTTTCTATTCAGACTGGTATGCGGGGGATGGCTGCATGTTGTGAGCTACGTTTTAAGAGGCAGACTAGAGCAGCGATTGTGATTCAGAGCCATTGCCGGAAATACTTGGCACATCTTTATTTTAGGAAGTTAAAGAAATCAACAATTACAACCCAATGCGCATGGAGAGGAAGAGTTGCTAGGCGAGAATTGCGGAAGCTCAAGATGGCTGCAAGAGAAACTGGAGCTCTTCAAGCTGCCAAAAATAAACTTGAAAAGCAGGTTGAAGACCTTATGTTGAGGTTGCAGCTGGAGAAACGGATGAGGGTTGACATGGAAGAAGCCAAAACACAAGAAAATGAAAGATTGCAGTCTTCTTTGCATGAGATGCAACTTCAGTTTAAAGAAACTAAAGCGCTGCTTGAAAAGGAGCGTGAGGCTGCAAAAAGGGCAGCAGAGATTGTGCCTGTCATACAGGAAGTTCCAGTTGTTGATCATGCATTGTTGGAGAAGCTTACTAGTGAAAATGAAAAACTCAAGACCATGGTGAGTTCACTGGAAAAGAAAATTGATGAAACAGAAAAAAGGTGTGAAGAGGCAAAAAAAATTAGTGAAGAAAGGTTGAAGCAAGCTTTGGAGGCAGAATCAAAGATAATTCAGTTGAAGACTTCTATGCAAAGACTTGAAGAGAAATTCTCAGATATAGAATCTCAAAACCAAATTATGCAATACCAATCTCTGCAAAACTCATCGGTGAAAAAGATGTCCGAGCACCTCTCAATCCATGTAGCTGAGCAGAAGTTGGAAAATGGTCAACATGTGATGGAAGAGCATAAAGCTGTTGAAGCTCAGAGTGTGACACCTGTTAAAAAGTTTGGTACAGAATCTGATAGCAAATTTAGGAAATCCTACATTGAACGTCAACATGAGAATGTTGATGCTCTTATCAATAGTGTTACGAAGAATATTGGGTTCATTCATGGGAAGCCTGTAGCTGCAATCACCATATACAAATGTCTTCTCCACTGGAAATCATTTGAAGCTGAAAGGACTAGTGTATTTGATCGCCTTATCCAGATTATTGGTTCTGCAATTGAGAGTCAAGATGACAATGACCTTATGGCTTATTGGCTGTCTAATACATCTGCGTTATTGTCCCTGCTCCAACAAAGTCTGAAATCTGGTGGGACAACTGATGCAACACCAGTTAAAAAACCACCTAATCCAACGTCCCTCTTTGGAAGAATGACTATGAGTTTTCGTTCATCCTCTTCTTTCAACCTTGCTGCCCCTGCATTGGAGGTTATACGCACGGTAGAAGCCAAATACCCTGCTTTACTTTTTAAGCAGCAGCTCACAGCTTATGTGGAGAAGATTTACGGCATTGTTCGGGACAACTTGAAGAAGGAATTATCATCACTGCTTTCACTATGTATCCAGGCACCAAGAACATCAAAAGGAGTCGTACGAACTGGCCGATCCTTTGGTAAAGATTCTCCAACGGACCACTGGCAGAGTATTATTGAATCCCTGAACAAATTGCTGTGCACGCTGAAAGAGAACTTTGTGCCTCCAGTACTTATGCAAAAGATCTTCACTCAAACATTCTCATATATTAATGTACAACTCTTCAACAGTCTTCTTCTACGTCGTGATTGTTGCACATTCAGCCATGGGGAATATGTGAAAGCTGGATTAGCTGACCTGGAACTATGGTGCTGCCAAGCAAAGGAGGAGTATGCAGGACAATCTTGGGATGAACTTAAGCACATAAGACAGGCTGTTGGATTCTTGGTTATTCATCAGAAGTATAGAATTTCCTATGATGAAATTACCAATGATTTATGCCCTATACTGAGCGTCCAGCAGCTTTACAGAATCTGTACACTTTATTGGGATGGTAATTATAACACTCGAAGTGTATCTCCAGATGTCATTTCGAGCATGAGGAAGCTTATGGCTGAGGACTCTAATAATGCTCTCAGTGATTCGTTCTTGTTGGATGACAATTCCGGCATCCCCTTCTCGGTGGATGACATCTCTTCATCACTGCCAGAGAAGGACTTCTCAGATGTGAAACCTGCAGAAGAACTTCTTGAGAATCCAGCCTTCCAATTTTTAAATGAGTAG 4536 0.4109 MVSVSPIVGSHVWVEDPDVAWIDGEVLEVNGEEIKVLCSSGKTVVVKSLHTYLKDNEAPPCGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFTKLPHLYDGHMMAQYKGAAFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQQGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCSAPPEDVQKYKLGNPRMFHYLNQSNCYELEGIDDSKDYITTRRAMDIVGISSEEQDAIFRVVAAILHLGNIEFAKGKEIDSSIPKDEKSRFHLQTAAELFMCDAKALEDSLCKRVIVTRDETITKSLDPEIAALSRDALAKIVYSRLFDWLVDKINISIGQDPESKFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHRRFSKPKLSRSDFTISHYAGDVTYHTELFLDKNKDYVVAEQQALLGASKCPFVSGLFPPSTEDSSKQSKFSSIGSRFKNQLQALLEILSATEPHYIRCVKPNNFLKPAIFENKNVLLQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFGLLAAEALDGSCDEITACKRILHKVGLKGYQIGKTKVFLRAGQMAELDTCRSEVLGKSASIIQRKVRSFLARRTFVLLCLSATRIQAACRGQLDRQVYRGMQREALSLMIQRCFRMHFAWKAYNELHASAVSIQTGMRGMAACCELRFKRQTRAAIVIQSHCRKYLAHLYFRKLKKSTITTQCAWRGRVARRELRKLKMAARETGALQAAKNKLEKQVEDLMLRLQLEKRMRVDMEEAKTQENERLQSSLHEMQLQFKETKALLEKEREAAKRAAEIVPVIQEVPVVDHALLEKLTSENEKLKTMVSSLEKKIDETEKRCEEAKKISEERLKQALEAESKIIQLKTSMQRLEEKFSDIESQNQIMQYQSLQNSSVKKMSEHLSIHVAEQKLENGQHVMEEHKAVEAQSVTPVKKFGTESDSKFRKSYIERQHENVDALINSVTKNIGFIHGKPVAAITIYKCLLHWKSFEAERTSVFDRLIQIIGSAIESQDDNDLMAYWLSNTSALLSLLQQSLKSGGTTDATPVKKPPNPTSLFGRMTMSFRSSSSFNLAAPALEVIRTVEAKYPALLFKQQLTAYVEKIYGIVRDNLKKELSSLLSLCIQAPRTSKGVVRTGRSFGKDSPTDHWQSIIESLNKLLCTLKENFVPPVLMQKIFTQTFSYINVQLFNSLLLRRDCCTFSHGEYVKAGLADLELWCCQAKEEYAGQSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDGNYNTRSVSPDVISSMRKLMAEDSNNALSDSFLLDDNSGIPFSVDDISSSLPEKDFSDVKPAEELLENPAFQFLNE 1511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3033 1511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 786 882 IPR027417 -
Dere01g3033 1511 SMART MYSc_2a 55 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere01g3033 1511 CDD MyosinXI_CBD 1108 1480 IPR037975 GO:0007015
Dere01g3033 1511 Gene3D - 785 831 - -
Dere01g3033 1511 Gene3D - 832 881 - -
Dere01g3033 1511 Gene3D - 733 784 - -
Dere01g3033 1511 PANTHER MYOSIN 57 1445 - -
Dere01g3033 1511 Gene3D - 666 729 - -
Dere01g3033 1511 FunFam Myosin heavy chain 251 306 - -
Dere01g3033 1511 Pfam Myosin N-terminal SH3-like domain 8 48 IPR004009 GO:0003774|GO:0005524|GO:0016459
Dere01g3033 1511 Gene3D Myosin VI head, motor domain, U50 subdomain 311 600 - -
Dere01g3033 1511 Pfam DIL domain 1333 1435 IPR002710 -
Dere01g3033 1511 SMART iq_5 852 874 IPR000048 GO:0005515
Dere01g3033 1511 SMART iq_5 733 755 IPR000048 GO:0005515
Dere01g3033 1511 SMART iq_5 756 778 IPR000048 GO:0005515
Dere01g3033 1511 SMART iq_5 781 803 IPR000048 GO:0005515
Dere01g3033 1511 SMART iq_5 829 851 IPR000048 GO:0005515
Dere01g3033 1511 SMART iq_5 804 826 IPR000048 GO:0005515
Dere01g3033 1511 Coils Coil 876 949 - -
Dere01g3033 1511 Gene3D Kinesin motor domain 64 661 IPR036961 -
Dere01g3033 1511 Coils Coil 1013 1047 - -
Dere01g3033 1511 ProSiteProfiles IQ motif profile. 830 859 IPR000048 GO:0005515
Dere01g3033 1511 ProSiteProfiles IQ motif profile. 760 786 IPR000048 GO:0005515
Dere01g3033 1511 Pfam Myosin head (motor domain) 63 719 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere01g3033 1511 SMART DIL_2 1332 1439 IPR002710 -
Dere01g3033 1511 PRINTS Myosin heavy chain signature 195 222 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere01g3033 1511 PRINTS Myosin heavy chain signature 428 456 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere01g3033 1511 PRINTS Myosin heavy chain signature 91 110 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere01g3033 1511 PRINTS Myosin heavy chain signature 481 509 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere01g3033 1511 PRINTS Myosin heavy chain signature 148 173 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere01g3033 1511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 785 IPR027417 -
Dere01g3033 1511 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 7 56 IPR004009 GO:0003774|GO:0005524|GO:0016459
Dere01g3033 1511 Gene3D - 438 622 - -
Dere01g3033 1511 CDD MYSc_Myo11 75 719 IPR036018 -
Dere01g3033 1511 FunFam unconventional myosin-Va 832 880 - -
Dere01g3033 1511 Pfam IQ calmodulin-binding motif 736 754 IPR000048 GO:0005515
Dere01g3033 1511 Pfam IQ calmodulin-binding motif 760 778 IPR000048 GO:0005515
Dere01g3033 1511 Pfam IQ calmodulin-binding motif 855 874 IPR000048 GO:0005515
Dere01g3033 1511 Pfam IQ calmodulin-binding motif 831 851 IPR000048 GO:0005515
Dere01g3033 1511 Coils Coil 971 1005 - -
Dere01g3033 1511 ProSiteProfiles IQ motif profile. 853 882 IPR000048 GO:0005515
Dere01g3033 1511 FunFam Class V myosin 438 576 - -
Dere01g3033 1511 Gene3D - 251 309 - -
Dere01g3033 1511 ProSiteProfiles Dilute domain profile. 1157 1457 IPR002710 -
Dere01g3033 1511 ProSiteProfiles Myosin motor domain profile. 61 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Dere01g3033 1511 FunFam Myosin 2 311 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3033 Dere-ChrDere01 44822281 44848929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3033 1 1510 Myosins gene family AT5G43900 74.802 0.0 2316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3033 01 44822281 44848929 Dere02g0873 02 8278651 8297245 CCT
Dere01g3033 01 44822281 44848929 Dere01g3033 01 44822281 44848929 ECH