Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3020 ATGTATCCTCTCCTCGCCATCCCACGGCTGCCATATTCTGACAAGCTTTGAATTTTCTTTTCCGTTCAGATCAACAGAGACAGTATGAATCACTGTGTTCCAGATTTCGAAATCGAAATGGATGATTATGAATACCCAATACCCACCTCTTCAGGGATACCTCGCCCAAAGAAGCCCTCCGTGCCCGAGGGCGATGTCATGGAACTATTATGGCAAAACGGCCAGGTCGTGATGCAGAGCCAGAATCAACGACCTCTCAGAAAACTGCCGCTGGAGAGATACACCAGCAGCGTAATTCCCGCAGGTCCATCTACGGCGAGGGAGATTCGACCCTCTCAACAAGTAGAACAACACTATGACAACCAACATCTCTTCATGCAAGAAGATGAAATGACTTCCTGGCTTCACTATCCCATCGTCGATGATCCTCCCTTGGATCACGATTTCTGCGCCGACATCCTTTACCCGCCGCCACAGCAGCCGCCGCCCACTGTTAATAACAGTACCATACAAAACCCTGTCGATACATGTCAAGTAACGGAACTCCGGCAGCCGCCGAGGTCGGTAGCTCCTCGGCCGCCGATTCCGCCCCCGAGGAAATCCGAGCAGGTGCAGACGAAGATACCGAACTTCGCGCTCTTCTCGAAACCCAATGCAAGAGTTGAAGCAGGGCCGTCGAGTTCGAAGACGGCGGTGAAGGAATCGACGGTGGTAGATTCATGCGACACTCCGGCAGCGATGGTGTCGGTTTCCAGAGTCTCGGAAACTGTCCGAAACTCGGCGGAGCCAGCACATGGTGATGCTGCTCGTCGAACCCTGAGCACTGCCGGAGTTGTGGCACCTTCGGCAACGTCCGCCGGTGAAGATACTAGATTGAGGGAGGCGACGACGTGTGAAATGACGGCGACTTCATCGCCGGGAGGTTCGAGCGGCAGCGCTGAACCGGCGCGGAGACCGCCGGCTGAAGATAGGAAGCGGAAGGGCCGGGAACCCGAGGACTCCGAGGGTCACAGCGAGGATGTCGGTTTTGAATCTGCTGAAGCAAAAAAACAAATTTGTGGATCAACATCTACGAAGAGATCTCGTGCTGCAGAGGTCCATAATCTCTCAGAGAGGAGGCGTCGAGATAGGATTAACGAAAAGATGAGAGCTTTGCAAGAACTTATACCTCGGTGCAATAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGATGCCAATGATGTTTCCCGGAATCCAGCAGTATATGCCACCCATGGGAATGGGAATCGGAATGGGTATGAGCATGGAAATGGGAATGAATAGATCACTAATGCCATTTCCCAACATTTTAGCTGCTTCTGCCTTGCCACCAGGAGCAACTGCAACTGCAACTGCAGCTACTGCTCATTTAGGACCGAGGTTTCCTATGCCTCCTTTCCATATGCCCCATGTCCCTCCACCTGATTCATCCAGAATGCATGCACCGACACCAAATCAATCAGATAATAATATGCTTCCTTCTCATGTCACACCTGATCCCAATCAGTCACGGATCCCAAACTTCACTGATCCTTATCAGCAATACCTTGGTCCCCACCAAATGGGTCTACAGTTCATGCAGAATCAGGCAATGAACAACCCAAATGCCAGCAAGCCAAGTACCAGTAAGAGCTATGAAAATGCAGAAAATAATCAGCCAGGAACGTGA 1749 0.5106 MYPLLAIPRLPYSDKLXIFFSVQINRDSMNHCVPDFEIEMDDYEYPIPTSSGIPRPKKPSVPEGDVMELLWQNGQVVMQSQNQRPLRKLPLERYTSSVIPAGPSTAREIRPSQQVEQHYDNQHLFMQEDEMTSWLHYPIVDDPPLDHDFCADILYPPPQQPPPTVNNSTIQNPVDTCQVTELRQPPRSVAPRPPIPPPRKSEQVQTKIPNFALFSKPNARVEAGPSSSKTAVKESTVVDSCDTPAAMVSVSRVSETVRNSAEPAHGDAARRTLSTAGVVAPSATSAGEDTRLREATTCEMTATSSPGGSSGSAEPARRPPAEDRKRKGREPEDSEGHSEDVGFESAEAKKQICGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMMPMMFPGIQQYMPPMGMGIGMGMSMEMGMNRSLMPFPNILAASALPPGATATATAATAHLGPRFPMPPFHMPHVPPPDSSRMHAPTPNQSDNNMLPSHVTPDPNQSRIPNFTDPYQQYLGPHQMGLQFMQNQAMNNPNASKPSTSKSYENAENNQPGT 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3020 582 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 440 IPR036638 GO:0046983
Dere01g3020 582 MobiDBLite consensus disorder prediction 507 582 - -
Dere01g3020 582 MobiDBLite consensus disorder prediction 489 506 - -
Dere01g3020 582 SMART finulus 368 417 IPR011598 GO:0046983
Dere01g3020 582 MobiDBLite consensus disorder prediction 296 311 - -
Dere01g3020 582 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 411 IPR011598 GO:0046983
Dere01g3020 582 MobiDBLite consensus disorder prediction 165 183 - -
Dere01g3020 582 FunFam Basic helix-loop-helix transcription factor 357 420 - -
Dere01g3020 582 MobiDBLite consensus disorder prediction 254 374 - -
Dere01g3020 582 Pfam Helix-loop-helix DNA-binding domain 366 412 IPR011598 GO:0046983
Dere01g3020 582 MobiDBLite consensus disorder prediction 317 346 - -
Dere01g3020 582 CDD bHLH_AtPIF_like 362 425 IPR047265 -
Dere01g3020 582 MobiDBLite consensus disorder prediction 150 202 - -
Dere01g3020 582 PANTHER TRANSCRIPTION FACTOR PIF3 55 523 IPR044273 GO:0003700|GO:0006355
Dere01g3020 582 Gene3D - 357 420 IPR036638 GO:0046983
Dere01g3020 582 MobiDBLite consensus disorder prediction 483 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3020 Dere-ChrDere01 44684353 44688900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3020 29 417 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 43.035 1.05e-69 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g3020 HLH 2.1e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3020 01 44684353 44688900 Dere02g0882 02 8402289 8405468 CCT
Dere01g3020 01 44684353 44688900 Dere01g3020 01 44684353 44688900 ECH