Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3006 ATGGCGGCAGCGAGGCGGCTCCGGGACCTGCAAGCGCTACCGGCGAACAGGATCTGCGTTGATTGCTCTCAGAAGAACCCCCAATGGGCCTCTGTTTCCTACGGAGTCTTCATGTGCTTGGAGTGCTCCGGCAAGCACCGTGGCCTGGGTGTCCATATCTCCTTCGTCCGATCCGTTACGATGGATTCCTGGTCCGATATCCAGATCAAAAAGATGGAAGCTGGTGGTAATGAGCAACTCAACGCCTTCCTTGCCCAGTATGGCATCTCCAAGGAGACCGATATCGTCACCAAGTACAATACCAATGCGGCTAGCATTTATAGGGATCGGATTCAGGCCTTGGCTGAGGGACGACCATGGCGGGATCCACCGGTCGTCAAGGAGAACCTTGGCCCTGGGAGGAGTAAGCCTCCATTGCCGAAAAGTGGGAATGATGGAGGCTGGGATAATTGGGATAACGATGACGGGTTCAGATCTCCCCATGACTTCAAGCGCAACATGTCTACGGGGGATGTTAGAGGGTTCAATGGCGGCTCAGCCGGAAGCATGCCCGCGAGATCGAGGTCGACGGAGGATATCTACACGCGGTCGCAATTGGAGGCCTCCGCTGCTAACAAGGAGAGCTTTTTCGCTCGGAAGGTGGTGGAGAACGAATCACGACCCGAAGGGCTTCCACCCTCGCGAGGAGGCAAGTACGTTGGGTTTGGATCTAGTCCCGCGCCTTCCCAGATGAATAACCAGCAAAACGATGTCTTCTCCGTTGTGTCTCAGGGATTTGGTAAATTATCCATGGTTGCTGCCTCTGCGGCTCAGTCTGCTGCTAATGTTGTTCAGGCTGGCACTAAAGAGATCACGACCAAGGTAAAGGATGGTGGCTATGATTACAGGGTTAACGAAACTGTCAATGTTGTCACTCAGAAGACATCAGAGATAGGACAAAGGACGTGGGGGATTATGAAGGGGGTCATGGCTTTGGCTACACAGAAGGTTGAGGAGTACACCAGAGATAACTCCAATTGGACAACTGATAACTGGCAGCGAAATGAAAATGATAGAAATGGCTACTATCAAGAATATAACCAAGACAATAAAGGTTGGAATTCTTCTACCAGAGGAGGGCAACCTTCTTCAGATGGGCAGATTAATACTCTCAACTCAAGCTCTTGGGATGATTGGGACCGCAAAGATACTAAGTAA 1197 0.5155 MAAARRLRDLQALPANRICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSDIQIKKMEAGGNEQLNAFLAQYGISKETDIVTKYNTNAASIYRDRIQALAEGRPWRDPPVVKENLGPGRSKPPLPKSGNDGGWDNWDNDDGFRSPHDFKRNMSTGDVRGFNGGSAGSMPARSRSTEDIYTRSQLEASAANKESFFARKVVENESRPEGLPPSRGGKYVGFGSSPAPSQMNNQQNDVFSVVSQGFGKLSMVAASAAQSAANVVQAGTKEITTKVKDGGYDYRVNETVNVVTQKTSEIGQRTWGIMKGVMALATQKVEEYTRDNSNWTTDNWQRNENDRNGYYQEYNQDNKGWNSSTRGGQPSSDGQINTLNSSSWDDWDRKDTK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3006 398 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Dere01g3006 398 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Dere01g3006 398 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Dere01g3006 398 MobiDBLite consensus disorder prediction 338 398 - -
Dere01g3006 398 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 398 IPR044519 GO:0005096|GO:0016192
Dere01g3006 398 MobiDBLite consensus disorder prediction 151 168 - -
Dere01g3006 398 MobiDBLite consensus disorder prediction 338 388 - -
Dere01g3006 398 SUPERFAMILY ArfGap/RecO-like zinc finger 5 111 IPR037278 -
Dere01g3006 398 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Dere01g3006 398 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Dere01g3006 398 Pfam Putative GTPase activating protein for Arf 5 94 IPR001164 GO:0005096
Dere01g3006 398 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Dere01g3006 398 CDD ArfGap_ArfGap1 3 117 - -
Dere01g3006 398 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Dere01g3006 398 MobiDBLite consensus disorder prediction 118 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3006 Dere-ChrDere01 44584292 44587233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3006 5 87 C2H2 Transcription Factor Family AT4G05330 51.190 3.28e-23 97.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3006 01 44584292 44587233 Dere02g0897 02 8577475 8580833 CCT
Dere01g3006 01 44584292 44587233 Dere01g3006 01 44584292 44587233 ECH