Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3002 ATGACAACTTTTCTCAAGCCAGAAAATAGTTTGAAACGGGCTGAAGAGCTAATCAATGTTGGGCAGAAGCAGGCTGCTTTGCAAACTCTACATGACCTTATCACTTCAAAAAGATACAGGGCATGGCAGAAGACAATGGAAAAAATAATGTTCAAGTATATAGAACTATGTGTGGACATGCGAAAAGGGCGGTTTGCAAAGGATGGGCTCATTCAGTATCGAATCATATGTCAGCAGGTTAATGTCAGTTCACTGGAGGAGGTGATCAAGCATTTCTTGCATCTGTCAACTGAAAAAGCTGAACAAGCTCGTAGCCAGGCGCAAGCATTAGAAGAGGCTCTTGATGTTGATGATTTAGAGGCAGATAAAAGGCCAGAGGACTTGATGCTAAGCTATGTAAGTGGGGAGAAAGGAAAAGACAGATCTGATCGGGAGCTTGTGACCCCATGGTTTAAATTTCTATGGGAAACATACAGGACAGTTCTTGAGATATTACGGAACAACTCAAAATTAGAAACCCTATATGCTATGGCAGCACACCGGGCTTTTCTGTTTTGCAAACAATATAAGCGAACTACAGAGTTCCGCAGACTCTGTGAAATCATAAGAAACCATCTAGCCAATCTTAATAAGTATCGAGATCAAAGGGACCGACCTGATCTTTCAGCTCCTGATAGTCTGCAACTATATCTTGACACAAGATTTGAGCAGCTGAAGATTGCCACTGAACTTGAACTTTGGCAGGAAGCCTTTCGATCCATTGAAGATATACATGGACTGATGGCCTTGGTCAAGAAAACACCCAAGGCATCCTTGATGGTTGTTTACTATGCAAAGCTGACTGAAATATTTTGGATATCATCAAGTCATCTGTATCATGCCTATGCATGGTTTAAGCTCTTTTTGCTACAGAAGAATTTCAATAAAAATCTGAGCCAAAAGGATTTACAATTAATCGCATCTTCTGTTGTTTTGGCTGCACTTTCTGTGCCTCCCTATGGTCACACCCAAGCTGCATCTCATTTGGAACTGGAGCATGCAAAAGAGAAGAACTTGAGGATGGCTAATCTCATTGGCTTTAATCTTGAAAATAAACCTGAGAGTAGAGAAATGCTTTCAAGATCATTCTTGCTTTCTGAACTGGTTTCCAAAGGAGTGATGTCTTGTGTGACTCAGGAAGTCAAGGACATTTACCATCTATTGGAACATGAATTTCTTCCCTTAGATCTTGCGTTAAAAGTTCAACCCTTGTTAACAAAAATCTCAAATTTAGGGGGGAAGCTTGCCTCTGCATCCTCTGTCCCAGAGGTGCAGTTGTCTCAGTATGTCCCAGCACTGGAAAAACTTTCTACCTTGAGGTTGATACAGCAGGTGTCCAATGTGTACCAGACCATAAAGATTGAGACCTTGTCTGCGATGATCCCCTTTTTTGATTTTTCTGTTGTGAAAAAGATTTCTGTGGATGCTGTTAAGCATAAATTTGTATCCATGAAAGTAGATCACATGAAAAGTGTCATTGTTTTCTCCAAGATGAGTCTTGAGTCTAATGGCTTAAGGGACCAGTTGGCCATTTTTGCTGAACATTTGAATAAGGCAAGACAAATGATTCATCCTCCTGATAGGAAACCATCAAAGGTCAGTGCTGTGCTTCCTACTTTGGCAGATGTTGTGGCCAAGGAACACAAGAGGCTTCTTGCTCGAAAATCAATCATTGAGAAGCGGAAAGAAGAACAAGAACGACAGCTTCTTGAAATGGAACGTGAGGAGGAGTCAAAGAGATTGAGACTGCAGAAAATAACTGAAGAAGCAGAACAAAGAAGACTTGCTACTGAGTATGAGCAGAGGAAGAATCAGAGAATACTCAGGGAAATAGAGGAAAGGGAAATGGAAGAAGCCCAAGCTTTGCTTCAGGAAGCTGAAAAACGTATGAAAAGGAAGGGAAAGAAGCCAATTATAGAGGGGGAAAAACTGACCAAACAAACCTTGATGGAGTTGACCTTGACTGAGCAACTACGAGAAAGACAGGAAATGGAAAAGAAACTGCAAAAGTTGGCTAAAACGATGGATTATTTGGAAAGAGCCAAAAGAGAAGAGGCTGCTCCTGTTATTGAAGCTGCATATCAAAAGCGCCTAGTGGAAGAGAGGATTCTTCATGAGCACGAGCAACAGCAAGAGGTTGAGCTCAGCAAACAGCGCCATGAGGGGGATCTAAAGGAGAAAGAGAGGCTAGTTCGAATGATAGGCAATAAAGAGATATATCAAGAGAGAGTTGTCAGTCGTCGTCAAGCAGAATTTAACAGATTAAGAAGAGAAAGAGATGAGCGAATCTCCAAGATTTTGCAGTCGAGGAGACGAGAGCGAGAAAAGATGAGGAAATTAAACTTTTATCTGAAATTAGAAGAAGAAAAACAACAAAAATTGCATGAGGAGGAGGAAGCTCGAAAGCGTGAAGAGGCTGAGAGACGAAAGAAGGAGGAAGCTGAACGCCTAGCAAAATTGAATGAGATAGCTGAAAAGCAGAGGCAGAGAGAGAGGGAACTCGAAGAAAAGGAGAGGCAAAGGAGAGAAACACTGTTGGGCAAATCTACTGATGCAGCCTCAAAGCCTTCTGAACCTCTCTGTCCATCAGATACAGAACCTGCTGCAGCTGCTGCTGCTCCTGCAGCAGCTGCAGCAGCAGCACCCACCCCAGCCCCAGGGAAATACATCCCTAAGTTTCGACGTGAGAGGGCTGAAGGTATAGCTCGTCCGCTGGAAACTGATCGGTGGACTAACACTGGCAGCAGGCAGGATGGTGACAGGTGGCGTAGTGATGATCGCCCACCTGCATTTGGTGCTGGTGGGGGTTCAAGGTCATCATCATCATCGTGGTCTTCGTCCAGGAATCGCTGA 2892 0.4312 MTTFLKPENSLKRAEELINVGQKQAALQTLHDLITSKRYRAWQKTMEKIMFKYIELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFLHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLETLYAMAAHRAFLFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPDSLQLYLDTRFEQLKIATELELWQEAFRSIEDIHGLMALVKKTPKASLMVVYYAKLTEIFWISSSHLYHAYAWFKLFLLQKNFNKNLSQKDLQLIASSVVLAALSVPPYGHTQAASHLELEHAKEKNLRMANLIGFNLENKPESREMLSRSFLLSELVSKGVMSCVTQEVKDIYHLLEHEFLPLDLALKVQPLLTKISNLGGKLASASSVPEVQLSQYVPALEKLSTLRLIQQVSNVYQTIKIETLSAMIPFFDFSVVKKISVDAVKHKFVSMKVDHMKSVIVFSKMSLESNGLRDQLAIFAEHLNKARQMIHPPDRKPSKVSAVLPTLADVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRLQKITEEAEQRRLATEYEQRKNQRILREIEEREMEEAQALLQEAEKRMKRKGKKPIIEGEKLTKQTLMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPVIEAAYQKRLVEERILHEHEQQQEVELSKQRHEGDLKEKERLVRMIGNKEIYQERVVSRRQAEFNRLRRERDERISKILQSRRREREKMRKLNFYLKLEEEKQQKLHEEEEARKREEAERRKKEEAERLAKLNEIAEKQRQRERELEEKERQRRETLLGKSTDAASKPSEPLCPSDTEPAAAAAAPAAAAAAAPTPAPGKYIPKFRRERAEGIARPLETDRWTNTGSRQDGDRWRSDDRPPAFGAGGGSRSSSSSWSSSRNR 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3002 963 MobiDBLite consensus disorder prediction 948 963 - -
Dere01g3002 963 Coils Coil 615 649 - -
Dere01g3002 963 MobiDBLite consensus disorder prediction 926 940 - -
Dere01g3002 963 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 956 IPR027512 GO:0005852
Dere01g3002 963 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Dere01g3002 963 Pfam PCI domain 373 510 IPR000717 -
Dere01g3002 963 Gene3D UVR domain 217 269 - -
Dere01g3002 963 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Dere01g3002 963 MobiDBLite consensus disorder prediction 804 861 - -
Dere01g3002 963 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 951 IPR027512 GO:0005852
Dere01g3002 963 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Dere01g3002 963 Coils Coil 796 856 - -
Dere01g3002 963 Gene3D - 338 494 - -
Dere01g3002 963 Coils Coil 561 602 - -
Dere01g3002 963 MobiDBLite consensus disorder prediction 804 963 - -
Dere01g3002 963 MobiDBLite consensus disorder prediction 903 917 - -
Dere01g3002 963 Coils Coil 667 697 - -
Dere01g3002 963 Coils Coil 93 120 - -
Dere01g3002 963 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Dere01g3002 963 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3002 Dere-ChrDere01 44561191 44566731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3002 1 963 Eukaryotic Initiation Factors Gene Family AT4G11420 71.616 0.0 1312