Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2999 ATGTTCTCTTACGCAGACGATGCAAGTATTGGACTAGTAGATTTAGAAGTGGCTCACAGACAGAAGGCTCTACAAGGTCAGTCACAGACCTCTAATTTTCTCTCCAACTTCGAAGCTTGTTGTCGCCTGGTGCTTCGTGTCTTTGGCCTTCGTTGGGGTCATGGAGTTTGTCTTAGAATAGGGCAGGGATCCCCTATGGCTTTCATCTCTGGGTTTCACCGCCTTTTTGGCGATTCGTCTACTTCGCAATTTACTTCAGTTCGTCTTAGTTCAACTCTCACATCCTCCAAGCTTTTCGTTAGTGGTCTTTCAAGACTGACAACAGATGAAAAACTAAAGGAAGCATTTGCTCCTTTTAGGCAGCTGGTTGAAGCTAAGGTCATACCTGATAGAATCTCTGGAAGATCAAAAGGATATGGTTTTGTAACTTACACAACTATAGAAGAAGCCGAAAAGGCCAAGGAAGGAATGAATGCCAAGTTTTTGGACGGATGGGTTATTTTTGTTGATCCCGCCAAACCAAGAAAGCCCAAACCTCCTCCGCAGTCACAGCCTTAG 558 0.4462 MFSYADDASIGLVDLEVAHRQKALQGQSQTSNFLSNFEACCRLVLRVFGLRWGHGVCLRIGQGSPMAFISGFHRLFGDSSTSQFTSVRLSSTLTSSKLFVSGLSRLTTDEKLKEAFAPFRQLVEAKVIPDRISGRSKGYGFVTYTTIEEAEKAKEGMNAKFLDGWVIFVDPAKPRKPKPPPQSQP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2999 185 SMART rrm1_1 97 170 IPR000504 GO:0003723
Dere01g2999 185 PANTHER NUCLEOLAR PROTEIN 8 85 179 - -
Dere01g2999 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 164 IPR000504 GO:0003723
Dere01g2999 185 Gene3D - 78 183 IPR012677 -
Dere01g2999 185 SUPERFAMILY RNA-binding domain, RBD 94 183 IPR035979 GO:0003676
Dere01g2999 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2999 Dere-ChrDere01 44536806 44544022 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2999 96 178 Eukaryotic Initiation Factors Gene Family AT3G16380 37.349 3.08e-11 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2999 01 44536806 44544022 Dere01g2999 01 44536806 44544022 ECH