Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2997 ATGGCTTTCATATCTGGGTTTCACCGCCATCTTGGCGATTCGTCTGCTTCGCAATTTACTTCGATTCGTCTTAGTTCAACTCTCACATCCTCCAAGCTTTTCGTCAGTGCTAAGGTCATAACTGATAGAATCTCTGGAAGATCAAAAGGATATGGTTTTGTAACTTACACAACTATAGAAGAAGCTGAAAAGGCTAAGAAAGGAATGAATGCCAAGTTTTTGGATGGATGGGTTATTTTTGTTGATCCTGTCAAGCCAAGAGAGCCCAAACCTCCTCTGCAGTCACAGTCTCAGCCCTCTGAAACAGGTTTCACAGTTAACAAGACAGTTGGATGGTGTGGTTGA 345 0.4261 MAFISGFHRHLGDSSASQFTSIRLSSTLTSSKLFVSAKVITDRISGRSKGYGFVTYTTIEEAEKAKKGMNAKFLDGWVIFVDPVKPREPKPPLQSQSQPSETGFTVNKTVGWCG 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2997 114 SMART rrm1_1 1 82 IPR000504 GO:0003723
Dere01g2997 114 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 76 IPR000504 GO:0003723
Dere01g2997 114 PANTHER NUCLEOLAR PROTEIN 8 35 113 - -
Dere01g2997 114 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 86 IPR000504 GO:0003723
Dere01g2997 114 SUPERFAMILY RNA-binding domain, RBD 35 104 IPR035979 GO:0003676
Dere01g2997 114 MobiDBLite consensus disorder prediction 87 114 - -
Dere01g2997 114 Gene3D - 21 98 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2997 Dere-ChrDere01 44508159 44511318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2997 23 101 Eukaryotic Initiation Factors Gene Family AT3G16380 36.585 8.46e-08 47.0