Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2981 ATGGCTTTCATCTTTGGGTTTCACTGCCTTCTTGGTGATTTGTCTGCTTCGCAATTTACTTCAGTTCGTCTTAGTTCAACTCTCACATCCTCCAAGCTTTTCGTCAGTGGTCTTTCAAGACTGACAACAGATGAAAAACTAAAGGAAGCATTTGCTTCTTTTGGGCAACTAGCTGAAGCTAAGGTCATAACTGATAGAATCTTTGGAAGATCAAAAGGATATGGTTTTATAACTTACACAACTATAGAAGAAGCTGAAAAGGCCAAGGAAGGAATGAATGCCAAGTTTTTGGATGGATGGGTTATTTTTGTTAATCTCGCCAAACCAAGAGAGCCTCAACCTCCTCTGCAGTCACAGTCTCAGCCCTTTGAAACAGGTTTCACAGTTAACAAGACGGCTGCTGTATATGGTCGAGACCCCACTTGGGGACGCATTGCTGCTGCAGCTGGCTACTAA 456 0.4276 MAFIFGFHCLLGDLSASQFTSVRLSSTLTSSKLFVSGLSRLTTDEKLKEAFASFGQLAEAKVITDRIFGRSKGYGFITYTTIEEAEKAKEGMNAKFLDGWVIFVNLAKPREPQPPLQSQSQPFETGFTVNKTAAVYGRDPTWGRIAAAAGY 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2981 151 Gene3D - 16 119 IPR012677 -
Dere01g2981 151 SMART rrm1_1 32 105 IPR000504 GO:0003723
Dere01g2981 151 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 99 IPR000504 GO:0003723
Dere01g2981 151 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Dere01g2981 151 PANTHER NUCLEOLAR PROTEIN 8 21 139 - -
Dere01g2981 151 SUPERFAMILY RNA-binding domain, RBD 29 123 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2981 Dere-ChrDere01 44363568 44367646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2981 31 122 Eukaryotic Initiation Factors Gene Family AT3G16380 37.895 2.01e-12 61.6