Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2979 ATGAAGAGACAGAGAGAAAACGAAATCGCAGAGAGCTTAGATCTGGCCATTTCTCTGATGCTTCTGTCTCAGCCACAGGAAAGCAGTAAGTCACAGACAATCTCATCATCATCGCCTCAAGAATTTGAATGCAAGACCTGCAACCGCAAGTTCTCGTCGTTTCAAGCACTTGGAGGTCACAGAGCAAGCCACAAGAAGCCAAAGCTAGACGAAAAAGTACAAGAACAGAAAGTTAAATCCGTCAGATCAATGCACCAGTGCTCTATTTGCGGCCAGGAATTCTCTCTGGGACAAGCTCTGGGAGGGCACATGAGGAAGCACAGAGCAGCCATGAATGACCACGAGAACGAGAACGAAGGATTTCCGTCTATAAATGAGGTGGTTGCGAAAGTGCCTGTTATGAAAAGATCCAATAGCACCAGGGTTATGTGCTTGGACTTGAACTTGACTCCTCTTGAGAATGACTTGAAGTTACTTTTTGGAAATAGGGCACCTCAAGTTAATCTTTCTTTGTGCTGA 519 0.4528 MKRQRENEIAESLDLAISLMLLSQPQESSKSQTISSSSPQEFECKTCNRKFSSFQALGGHRASHKKPKLDEKVQEQKVKSVRSMHQCSICGQEFSLGQALGGHMRKHRAAMNDHENENEGFPSINEVVAKVPVMKRSNSTRVMCLDLNLTPLENDLKLLFGNRAPQVNLSLC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2979 172 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Dere01g2979 172 SUPERFAMILY beta-beta-alpha zinc fingers 42 107 IPR036236 -
Dere01g2979 172 PANTHER ZINC FINGER PROTEIN ZAT5 8 155 - -
Dere01g2979 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Dere01g2979 172 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Dere01g2979 172 Gene3D Classic Zinc Finger 39 107 - -
Dere01g2979 172 SMART c2h2final6 42 64 IPR013087 -
Dere01g2979 172 SMART c2h2final6 85 107 IPR013087 -
Dere01g2979 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Dere01g2979 172 Pfam C2H2-type zinc finger 85 109 - -
Dere01g2979 172 Pfam C2H2-type zinc finger 42 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2979 Dere-ChrDere01 44348219 44348737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2979 1 171 C2H2 Transcription Factor Family AT2G37430 45.946 2.82e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g2979 zf-C2H2_6 1.2e-08 CL0361