Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2978 ATGAAGAGACTGAGAGAAAACGAAATCCCATATAGCTTAGATCTGGGAATTTCTCTAATGCTTCCCTCTCAGCCACTAGCAACCAATCCCCACAACAACTCATCGCAGCATGAAGGATTTGAATGCAAGACTTGCAACCGCAAGTTCTCATCGTTTCAAGCGCTTGGAGGTCACAGAGCCAACCACAAGAGGCCAAAACTCGACGTGGAAGAGGAACAAGAAAGAGCCAATCTGGTGAGGCTGGGTAATAACAAGCCCAGAATGCATCAGTGCTCTATTTGTGGTCAGGAATTCACTCTAGGACAAGCTTTGGGAGGGCACATGAGGAAGCACAGAGCAGCCATGAACGACAATGAGAATGAGATCGAAAGCTTTCCATCTATAAATGAAGTGGTTGCTAAAGTGTCTGTTCTAAAAAGATCTAATAGTACCAGGATTATGTGCATGGACTTGAACTTAACACCTTTGGAGAATGACCTGAAGTTACTATTTGGCAATAAGGCACCTCATGTTAATCTTCCTTTGTGCTGA 531 0.4407 MKRLRENEIPYSLDLGISLMLPSQPLATNPHNNSSQHEGFECKTCNRKFSSFQALGGHRANHKRPKLDVEEEQERANLVRLGNNKPRMHQCSICGQEFTLGQALGGHMRKHRAAMNDNENEIESFPSINEVVAKVSVLKRSNSTRIMCMDLNLTPLENDLKLLFGNKAPHVNLPLC 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2978 176 Pfam C2H2-type zinc finger 40 65 - -
Dere01g2978 176 Pfam C2H2-type zinc finger 89 113 - -
Dere01g2978 176 SUPERFAMILY beta-beta-alpha zinc fingers 40 111 IPR036236 -
Dere01g2978 176 Gene3D Classic Zinc Finger 37 111 - -
Dere01g2978 176 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Dere01g2978 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Dere01g2978 176 PANTHER ZINC FINGER PROTEIN ZAT5 32 159 - -
Dere01g2978 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Dere01g2978 176 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Dere01g2978 176 SMART c2h2final6 40 62 IPR013087 -
Dere01g2978 176 SMART c2h2final6 89 111 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2978 Dere-ChrDere01 44339305 44339835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2978 1 175 C2H2 Transcription Factor Family AT2G37430 44.920 6.28e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g2978 zf-C2H2_6 2.2e-08 CL0361