Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2977 ATGAAGAGAGAGAGAGAGATAACAAAGGAAGAGTGCTTGTACGACTCAAGCAATTGTCTGATGCTTCTGTCTGGTGATGAAGAAAGAAAGCCCTATAGTGATGAATTTGAATGCAAGACGTGCAAGCGCAAGTTCTTGTCATTTCAAGCTCTTGGAGGGCACAGGGCTAGCCACAAGAGGGCGAAGCTAGATGGGGAAGATGTGCTCAAAGCAGAGGCCAAGTCTCTAAGCTTAGGGAATAAACCTAGAATGCACGAGTGCTCTATCTGTGGTGTGGAATTTTCTTTGGGCCAAGCACTTGGAGGACACATGAGGAGGCATAGAGCTGCTCTTCACCATGACTTGTCTTCTATAAACCACGTGATTGCCAAAGTCCCTGTTCTTAATAGGTCCAATTGTACGAGAATGGTGTGTTTGGACCTCAATTTAACCCCTCTCGAGAATGACTTGAAGTTATTGCTCGGGAAGATGGCACCTTCAGTTGATGCCTTAATTGTCTGA 501 0.4551 MKREREITKEECLYDSSNCLMLLSGDEERKPYSDEFECKTCKRKFLSFQALGGHRASHKRAKLDGEDVLKAEAKSLSLGNKPRMHECSICGVEFSLGQALGGHMRRHRAALHHDLSSINHVIAKVPVLNRSNCTRMVCLDLNLTPLENDLKLLLGKMAPSVDALIV 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2977 166 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Dere01g2977 166 SMART c2h2final6 85 107 IPR013087 -
Dere01g2977 166 SMART c2h2final6 36 58 IPR013087 -
Dere01g2977 166 Pfam C2H2-type zinc finger 36 60 - -
Dere01g2977 166 Pfam C2H2-type zinc finger 85 109 - -
Dere01g2977 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Dere01g2977 166 PANTHER ZINC FINGER PROTEIN ZAT5 30 149 - -
Dere01g2977 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Dere01g2977 166 Gene3D Classic Zinc Finger 27 107 - -
Dere01g2977 166 SUPERFAMILY beta-beta-alpha zinc fingers 36 107 IPR036236 -
Dere01g2977 166 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2977 Dere-ChrDere01 44334999 44335499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2977 1 166 C2H2 Transcription Factor Family AT2G37430 46.111 1.63e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g2977 zf-C2H2_6 2.2e-10 CL0361