Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2965 ATGGCATCCTTGGAAAATTTGTTGAAGCTGCTTTCTTCTCATCTATTTCCTCCGCTTGACATGTTTTTTTGTTTTGAGAAGCAAGCCTTTCAAGATGTCATCGCGGACACACCGAGAGTAAAGGTCCACGAGCTGAGGAACAAAACTAAGGCAGAGTTACTGAACCAACTGAAGGATCTCAAGGCGGAGCTCGCTCTGCTCCGCGTCGCTAAGGTCACCGGCGGTGCCCCGAACAAGCTCTCCAAGATAAAGGTGGTGAGGTTGTCAATAGCGCAGGTGTTGACGGTGATTTCCCAGAAGCAGAAGGCGGCGCTCAGAGAGGCTTACAAGAACAAGAAATATTTGCCTCTTGATCTCCGTCCCAAGAAGACCCGTGCCATTCGCAGGCGTCTTACCCAACATCAGGCATCAATGAAGACAGAACGTGTGAAGAAGAAAGAGATGTACTTTCCAGTGAGGAAGTATGCTATAAAACTGTAG 480 0.4833 MASLENLLKLLSSHLFPPLDMFFCFEKQAFQDVIADTPRVKVHELRNKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTQHQASMKTERVKKKEMYFPVRKYAIKL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2965 159 FunFam 60S ribosomal protein L35 114 159 - -
Dere01g2965 159 Gene3D - 38 113 IPR036049 GO:0003735|GO:0005840|GO:0006412
Dere01g2965 159 Gene3D - 114 158 - -
Dere01g2965 159 Hamap 50S ribosomal protein L29 [rpmC]. 40 100 IPR001854 GO:0003735|GO:0005840|GO:0006412
Dere01g2965 159 NCBIfam 50S ribosomal protein L29 44 100 IPR001854 GO:0003735|GO:0005840|GO:0006412
Dere01g2965 159 SUPERFAMILY Ribosomal protein L29 (L29p) 40 101 IPR036049 GO:0003735|GO:0005840|GO:0006412
Dere01g2965 159 Coils Coil 43 70 - -
Dere01g2965 159 CDD Ribosomal_L29_HIP 44 100 - -
Dere01g2965 159 FunFam 60S ribosomal protein L35 37 113 - -
Dere01g2965 159 PANTHER 60S RIBOSOMAL PROTEIN L35 39 158 IPR045059 GO:0000463|GO:0022625
Dere01g2965 159 Pfam Ribosomal L29 protein 44 100 IPR001854 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2965 Dere-ChrDere01 44170860 44175082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2965 39 159 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 86.777 1.36e-70 207