Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2954 ATGTCTCGTCCATCTCCGCCACCCTTAACGCTGTCGTCGGCGGTGCCCATCGCCGCTGATGACAGATTCCCCTTCTTCAACCAATCCATGGAGCTCGTCCAACTCCCGTATCAAAGGTCAACCAGAACCCATGTCTCCCCCTCCCTCGCCGACCTCCTTAAACGAGTCGAAGATGCTCAAAACGACGCCGCCCCACCCTACCGTGTCCTCGACCTCGTTTCTCCTTCTCCTCCTCCTTCCTCTTACTCCCTGGTCCTCTCCTTCACCAACTTAACTTACAGCGTCAGAGTCCGTCGCAAAATGAGCTTCTCCTCTTGCTTCTCTCGAAACCATGTCGATTTGAATTCCGCGCCCGAAGTTCATGACGTGGCTGTATCTGAACCAAAAGTTAACGGCACCAAGGTTCTGCTCAACGATATCTCCGGCGAGGCCAGAGACGGCGAGATCATGGCCGTTCTCGGCGCCAGTGGGTCCGGGAAATCGACACTGATAGATGCCCTTGCCAACCGAATCTCCAAAGAGAGCTTAAAAGGCACCGTCACTTTAAACGGAGAAGCTTTGGATTCCAGTCTTCTGAAAGTGATTTCAGCTTATGTCATGCAGGACGACCTTCTCTTTCCCATGCTCACTGTGGAAGAGACCCTCATGTTCTCCGCCGAGTTCAGGCTTCCTCGCTCCCTCTCTAAGTCCAGGAAGAAAGCCAGAGTCCAAGCTCTCATCGACCAATTGGGCCTCCGTAACGCCGCCAAAACCGTCATCGGCGACGAAGGTCACCGTGGCGTCTCCGGAGGCGAACGACGTCGTGTCTCCATCGGAATCGACATCATCCACGACCCCATCGTCTTGTTCCTCGACGAGCCCACTTCAGGACTCGACTCTACCAGCGCCTTCATGGTCGTCAAGGTGCTTCAACGAATCGCTCAAAGCGGAAGCATCATCATCATGTCCATACACCAACCGAGTTACAGAATCCTTGGGTTATTAGACCGTTTGATTTTCCTCTCGCACGGCCAAACAGTATACACTGGTTCGCCGGCGAGTCTCCCGGTGTTCTTCTCGGAGTTCGGTCACCCGATACCTGAAAACGAGAACCGCACCGAGTTTGCCCTGGACTTCGTTCGCGAGCTCGAACAAACCCCTGGAGGGACCAAGAGCTTAGTGGAATTCAACAAGTCATGGCAACCGAATCACACGAAAAGCAAGCCCAACGACGCTAACAACCCTCAAAACGGACACAGGGTTTCACTCAAGGACGCCATCGGCGCCAGCATTTCTCGAGGCAAATTAGTCTCTGGCGCGCCTGATAATTCAGATCTCACAACATCTTCATCAGTTCCCACTTTTGCAAATCCATCTTGGATCGAAGTGGCAGTGATAGCGAAACGATCGCTCATCAATTCCCGAAGAATGCCCGAACTGTTTGGTATCCGATTGGGTGCAATTCTCGTGACCGGAGTCATCCTAGCCACTATCTTCTGGCATCTCGATAATTCTCCAAAAGGTGCTCAAGAACGATTAGGCTTCTTCGCCTTCGCCATGTCCACAACCTTCTACACCTGCGCCGAAGCCATGCCTGTCTTCCTCCAAGAGCGATACATCTTCATGAGAGAAACCGCTTACAATGCCTACCGTCGATCCTCCTACGTTCTGTCCCATTCAATCATCACAATCCCATCCTTAGCTTTCCTCTCCTTAACATTCGCCGCCACGACATTCTGGGCGGTGGGTCTCGCGGGCGGTTCCTCCGGGTTCTTCTTCTACTTCTTCACCATCTTCGCATCTTTCTGGGCAGGAAACTCCTTCGTGACGTTCCTTTCAGGAGTCGTTTCGCACGTGATGTTGGGATTTACTGTGGTGGTTGCTATTTTAGCTTACTTCCTTCTGTTCAGTGGGTTCTTCATAAGCAGAGATAGAATTCCTATGTACTGGATATGGTTTCACTATCTTTCATTGGTGAAGTACCCATACGAGGGCGTTATGCAGAACGAATTCGATGTCCAGCCTCCGAGGTGCTTCGTGAGAGGGACGCAAATGTTCGACAATTCGCCGCTAGGGATGGTGCCGGAGACATTGAAGTTGGAGTTGCTGAAGAGTATGGGCAAGACGTTGGGGATAAACATCACGAGCTCGACGTGCGTGACAACAGGAATGGATATACTGAAGCAGCAGGGGATTACAGACCTGAGCAAATGGAATTGCCTGTGGATTACCATTGCTTGGGGATTTTTCTTCAGATTCCTGTTTTATCTGAGTCTGATGTTTGGAAGCAAGAACAAGAGAACCTAA 2286 0.5157 MSRPSPPPLTLSSAVPIAADDRFPFFNQSMELVQLPYQRSTRTHVSPSLADLLKRVEDAQNDAAPPYRVLDLVSPSPPPSSYSLVLSFTNLTYSVRVRRKMSFSSCFSRNHVDLNSAPEVHDVAVSEPKVNGTKVLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRISKESLKGTVTLNGEALDSSLLKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKSRKKARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIIIMSIHQPSYRILGLLDRLIFLSHGQTVYTGSPASLPVFFSEFGHPIPENENRTEFALDFVRELEQTPGGTKSLVEFNKSWQPNHTKSKPNDANNPQNGHRVSLKDAIGASISRGKLVSGAPDNSDLTTSSSVPTFANPSWIEVAVIAKRSLINSRRMPELFGIRLGAILVTGVILATIFWHLDNSPKGAQERLGFFAFAMSTTFYTCAEAMPVFLQERYIFMRETAYNAYRRSSYVLSHSIITIPSLAFLSLTFAATTFWAVGLAGGSSGFFFYFFTIFASFWAGNSFVTFLSGVVSHVMLGFTVVVAILAYFLLFSGFFISRDRIPMYWIWFHYLSLVKYPYEGVMQNEFDVQPPRCFVRGTQMFDNSPLGMVPETLKLELLKSMGKTLGINITSSTCVTTGMDILKQQGITDLSKWNCLWITIAWGFFFRFLFYLSLMFGSKNKRT 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2954 761 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 120 361 IPR003439 GO:0005524
Dere01g2954 761 Gene3D - 119 350 IPR027417 -
Dere01g2954 761 Pfam ABC-2 type transporter 457 664 IPR013525 GO:0016020|GO:0140359
Dere01g2954 761 SMART AAA_5 146 361 IPR003593 GO:0016887
Dere01g2954 761 FunFam ABC transporter G family member 6 126 352 - -
Dere01g2954 761 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 68 749 - -
Dere01g2954 761 MobiDBLite consensus disorder prediction 393 413 - -
Dere01g2954 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 348 IPR027417 -
Dere01g2954 761 Pfam ABC-2 type transporter 318 414 IPR043926 GO:0140359
Dere01g2954 761 Pfam ABC transporter 137 289 IPR003439 GO:0005524
Dere01g2954 761 ProSitePatterns ABC transporters family signature. 261 275 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2954 Dere-ChrDere01 44084069 44086354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2954 136 321 Calmodulin-binding Proteins AT2G36910 29.630 1.09e-11 66.6