Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2946 ATGGAAGAAACCGCAAGCATAATGGGTGTCCTCTCCACCCTCACTCCTTCTCAGCTTTCCGATCTCACTCACTCCATCGTCTCCGTCGTCCACCACCACCATCTCCGCCTCTCCTCCGTCCTCTCTTCGCAAACCCTCTTTTCCCTCTCCCTCCATTACCTCCACTCTCTCTCTCTTCCCCAAAAGACCCTCCTCATTGCTCGCCACCTCCTCTCTTCTCTCCACATCCTCACGCGCCATCTCCAACCACCGCCGCCGCCATTATCCACCGCCATGAGACAGCGTGACCTCGACGCCGTTCTGCTACTCCTCTTATTCTGCGATACCCACCAGCACAACCTACAAGCTCTCGAAGCGCCAGTTTCCGATTGGCGCAGAAGTTTGAGTGAACTCTTCTCTGAGACATTGTTGAGGATTTCTTCAACTCCTATTGGGGAATGCAGCGGCACGATTTTGATTCCTTATGTTGAGATGGTAATCCGGTGCCGGAGACTCGTGGGTGTAATGGATTGCGGGGGAGGAAAGGGTGGTGGGGAAGTGGCGGCGTCGAGGGAGGCAGTGGTGGCGCTGCCTGGGGTGGAGGTGAGGGCGGGTGGAAGAGAGTGCGTGATATGCAAAGAGGAGATGAGAGAGGGTAGGGACGTGTGCAAACTGCCATGTCAGCACGAGTTTCATTGGAAGTGTATATTGCCGTGGCTGAGGAAGAGGAACACGTGTCCTTGCTGCAGGTTCCGGCTGCCGTCCGATGATGTGCTGGGAGAGATCCAACGGCTGTGGGAGGTCTTGGTCAAAACGTGTGGGGTCCGAGGTGGGTGA 816 0.5625 MEETASIMGVLSTLTPSQLSDLTHSIVSVVHHHHLRLSSVLSSQTLFSLSLHYLHSLSLPQKTLLIARHLLSSLHILTRHLQPPPPPLSTAMRQRDLDAVLLLLLFCDTHQHNLQALEAPVSDWRRSLSELFSETLLRISSTPIGECSGTILIPYVEMVIRCRRLVGVMDCGGGKGGGEVAASREAVVALPGVEVRAGGRECVICKEEMREGRDVCKLPCQHEFHWKCILPWLRKRNTCPCCRFRLPSDDVLGEIQRLWEVLVKTCGVRGG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2946 271 Pfam Ring finger domain 201 243 IPR001841 -
Dere01g2946 271 SUPERFAMILY RING/U-box 199 248 - -
Dere01g2946 271 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Dere01g2946 271 SMART ring_2 202 242 IPR001841 -
Dere01g2946 271 CDD RING-H2_PA-TM-RING 201 243 - -
Dere01g2946 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 249 IPR013083 -
Dere01g2946 271 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 108 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2946 Dere-ChrDere01 44045292 44046107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2946 2 265 C3H Transcription Factor Family AT5G02750 48.387 3.81e-82 246