Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2940 ATGGGTTGGATTCCATGTTCTGGAAGTTCAAACACTAAGAAGAAGATAAAGAAGCAGATGAAGAAATCGGAGGTGCAAGAGAGCACGGCTGATCAGATCAAAGCCGCCCCAGGCAAGTTGAAGAGGAATTCATCCACAAATTCCAAAGATACCTCTAAAACTGGGAACCCTGACCACATTGCTGCCCAGACTTTCACATTTCGTGAGTTGGCAACTGCAACTAGAAATTTTAGAGCAGAATGCCTATTGGGTGAGGGAGGTTTTGGAAGAGTATACAAAGGGCGCTTGGAAACTACTAATCAGGTTGTTGCAATTAAGCAACTTGACCGAGACGGGCTGCAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTCCTACACCACCCTAACCTTGTTAACCTTATCGGATATTGTGCTGACGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTAGGATCCTTGGAAGACCACTTACATGATATTTCTCCTGGCAAGAAAAGTCTTGATTGGAATACACGAATGAAAATAGCAGCTGGGGCTGCAAAAGGGCTGGAATATCTACATGACAAAGCTAACCCACCCGTCATATACCGAGATTTAAAGTGTTCAAACATTTTGCTTGGTGAAAGGTATCATCCAAAGTTATCTGATTTTGGCTTGGCTAAACTTGGACCAGTAGGGGAAAACACTCATGTATCAACAAGGGTCATGGGCACTTATGGATATTGTGCTCCAGAGTATGCAATGACAGGTCAATTGACTCTGAAATCAGATGTCTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACCGGAAGAAAAGCTATTGACAATTCAAAGGCAGCAGGAGAACAGAATCTTGTTGCGTGGGCGAGACCTTTGTTCAAAGATCAACGAAAATTTTCGCAAATGGCAGATCCAATGCTCCAAGGTCAGTTTCCTCCAAGAGGCTTATACCAGGCCCTTGCAGTTGCAGCAATGTGTGTTCAGGAGCAGGCTAATTTGCGTCCAGTAATAGCTGATGTAGTCACAGCTTTGACTTACCTTGCTTCACAGAGATATGAACCAAATACGCAGACACCCCAAAGCTCCCGGCTTTCCCCTGCTACTCCTCCAAGAACCAAGTGGGGGCAATGA 1152 0.4375 MGWIPCSGSSNTKKKIKKQMKKSEVQESTADQIKAAPGKLKRNSSTNSKDTSKTGNPDHIAAQTFTFRELATATRNFRAECLLGEGGFGRVYKGRLETTNQVVAIKQLDRDGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDISPGKKSLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGERYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKAAGEQNLVAWARPLFKDQRKFSQMADPMLQGQFPPRGLYQALAVAAMCVQEQANLRPVIADVVTALTYLASQRYEPNTQTPQSSRLSPATPPRTKWGQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2940 383 SUPERFAMILY Protein kinase-like (PK-like) 59 351 IPR011009 -
Dere01g2940 383 Pfam Protein kinase domain 81 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2940 383 FunFam Serine/threonine-protein kinase PBS1 154 369 - -
Dere01g2940 383 Gene3D Phosphorylase Kinase; domain 1 45 153 - -
Dere01g2940 383 MobiDBLite consensus disorder prediction 1 58 - -
Dere01g2940 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Dere01g2940 383 SMART serkin_6 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2940 383 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Dere01g2940 383 PANTHER OS07G0668900 PROTEIN 21 363 - -
Dere01g2940 383 Gene3D Transferase(Phosphotransferase) domain 1 154 372 - -
Dere01g2940 383 MobiDBLite consensus disorder prediction 361 383 - -
Dere01g2940 383 FunFam Serine/threonine-protein kinase PBS1 49 153 - -
Dere01g2940 383 CDD STKc_IRAK 83 352 - -
Dere01g2940 383 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2940 383 MobiDBLite consensus disorder prediction 361 376 - -
Dere01g2940 383 MobiDBLite consensus disorder prediction 39 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2940 Dere-ChrDere01 43997289 44000168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2940 37 356 Glycoside Hydrolase AT3G07070 68.750 6.11e-167 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Dere01g2940 Pkinase 1.1e-46 CL0016