Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2939 ATGGATGTTAAGGAATCAGAAAGGGTAGTTGTTGCAAAACCGGTAGCTTCAAGGCCTACTTGTCCCACTTTTAAATCGTTTTCGGAGCTACTTGCAGGTGCCATCAATGCCTCTCCCACTGTTGAATCATCACAAGCCACAGTTTCAGCTATTAGACCAAAGACTGTGAGGTTCAAGCCAGCCACAAATCGCCCTCCTCCTGCTGGGTTTGTTTCTTCTGAGGCTAACCCATCTAACCCATCTGACAAGAGTCATAAACCAGACAATAATCAATCTGTGGTTTACAAGCCAATGGCTAAATTTGTCTCAAAGGCCACTGTTTCTCTTTTGGCAAATATGGGAAATTATAGTACTGGTCAGCAACCTCAACATCCCAACCAGGAGAAACTAAGGGCCAATTTGTGCTCGAATATTCATCAGAATAATAACATCCCACCTGCTGAAACAAATCTGACAAGTGAATGTTCCAAGATGGTACAGCAGAGCCAAGAGGAGGACCAGAAAACTTCACCATCCACCAGTAATGGTGGTGATAGACCTTGTTATGATGGGTATAACTGGAGGAAATATGGGCAGAAGCAAGTGAAAGGAAGCGAGTATCCAAGGAGTTATTACAAATGCACACATCCTAATTGTCCAGTAAAGAAGAAGGTTGAAAGATCATTTGATGGGCAGATTGCAGAAATTGTGTACAAAGGGGAGCACAACCATTCAAAGCCTCAGCCTCCAAAGCGCAACTCGGTGGGAACACAAGGATCGGGAATGGTGTCTGATGGATTGGGTCAAGATACTGATAGTAATAACCATTTATGTGGTAATCATAATGGTGAGAGGAATGAAGGTAGAATAGAGAACCAGAGTGACGCAAATTATCATGTCAAAGCTGGAGTAAGCCCTGAGAATTCGTACATTCAAAGTGAGGAATGTGAAGAAGGAAGCAAGGGAAATGAGGCGGAGGAAGATGAACCTAGAAGCAAAAGAAGGAAAAAAGAGAATCAATCAAATGAAGCACCTGTAGCAGAGGAAAGTTCAGTGGAGCCTCAGGTGGTGGTTCAGAGTTCTACAGATTCTGAAGTACTCGGAGATGGCTTTCGCTGGAGAAAATATGGACAGAAGGTGGTGAAGGGCAATCCACATCCCAGAAGTTATTATAGATGTACCAATATAAAGTGCAGCGCCCGCAAACATGTGGAAAGATCAATAGATGACCCAAAAGCATTTATCACTACATACGAGGGAAAGCACAACCATGAGATGCCACGCAAAACTACAGGTGCTATAGCCTCGGAAAAAGCCAAGTCCTGA 1305 0.436 MDVKESERVVVAKPVASRPTCPTFKSFSELLAGAINASPTVESSQATVSAIRPKTVRFKPATNRPPPAGFVSSEANPSNPSDKSHKPDNNQSVVYKPMAKFVSKATVSLLANMGNYSTGQQPQHPNQEKLRANLCSNIHQNNNIPPAETNLTSECSKMVQQSQEEDQKTSPSTSNGGDRPCYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHSKPQPPKRNSVGTQGSGMVSDGLGQDTDSNNHLCGNHNGERNEGRIENQSDANYHVKAGVSPENSYIQSEECEEGSKGNEAEEDEPRSKRRKKENQSNEAPVAEESSVEPQVVVQSSTDSEVLGDGFRWRKYGQKVVKGNPHPRSYYRCTNIKCSARKHVERSIDDPKAFITTYEGKHNHEMPRKTTGAIASEKAKS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2939 434 FunFam WRKY transcription factor 346 421 - -
Dere01g2939 434 Pfam WRKY DNA -binding domain 362 418 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g2939 434 Pfam WRKY DNA -binding domain 183 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g2939 434 SUPERFAMILY WRKY DNA-binding domain 354 420 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere01g2939 434 MobiDBLite consensus disorder prediction 337 357 - -
Dere01g2939 434 MobiDBLite consensus disorder prediction 138 179 - -
Dere01g2939 434 MobiDBLite consensus disorder prediction 412 434 - -
Dere01g2939 434 ProSiteProfiles WRKY domain profile. 355 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g2939 434 ProSiteProfiles WRKY domain profile. 183 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g2939 434 MobiDBLite consensus disorder prediction 53 95 - -
Dere01g2939 434 MobiDBLite consensus disorder prediction 317 336 - -
Dere01g2939 434 MobiDBLite consensus disorder prediction 242 274 - -
Dere01g2939 434 SUPERFAMILY WRKY DNA-binding domain 180 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere01g2939 434 Gene3D WRKY domain 167 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere01g2939 434 Gene3D WRKY domain 345 421 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere01g2939 434 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 105 423 IPR044810 GO:0003700
Dere01g2939 434 MobiDBLite consensus disorder prediction 138 185 - -
Dere01g2939 434 FunFam WRKY transcription factor 157 241 - -
Dere01g2939 434 MobiDBLite consensus disorder prediction 232 357 - -
Dere01g2939 434 MobiDBLite consensus disorder prediction 72 91 - -
Dere01g2939 434 SMART WRKY_cls 360 419 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g2939 434 SMART WRKY_cls 181 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2939 Dere-ChrDere01 43990905 43992797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2939 352 429 WRKY Transcription Factor Family AT2G37260 45.783 1.79e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere01g2939 WRKY 1e-25 CL0274