Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2936 ATGACAAGGGGTGTCCTGATGAGTGTTAATGGTGATGATGAAGAATTGCAAGAATTGACTCATCGTCTACGAGTTGGGGAAAAAACCTTTAAAGAAGGAGTTACTGGTGAGGAACACAGATTACATGAGGATAATGAGTTGAAAGCTAATGGAATAGCTGAAGAAGTTAAGGATGGACAAGGGGGTGCAGTGAAAGCCCCTGTTGTCCAGTCTATACCAAAACAACAGCCTCAAGGGGCCATTGTTTGTTGGGAGAGGTTTTTACATATTAGATCTCTTAAGGTCTTGCTAGTGGAGAATGATAATTCTACTCGCCATGTTGTTACTGCACTGCTTCGCAATTGTAGTTATGAAGTTATTGAAGCAGCGAATGGATTGCAAGCATGGAAGATGTTGGAGGATTTAACTAATCACATTGATCTCATTTTAACTGAGGTGGCAATGCCTTGCTTATCAGGCATTGGTCTTCTATGCAAGATTATGGGCCACAAAACACGAAAAAATATTCCAGTAATTATGATGTCATCTCATGACTCTATGGGTTTAGTATTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTTGTGAAACCCATACGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGCGGAGATGCCATAGTTCTAGTGGAAGTGGGAGTGGGAGTGGGAGTGGGAGCGAAAGTGGTACACAAACCCAGAAATCTGTAAAATCAAAGAGCCTTGAGAAGTCTGGTAACAACACTGGCAGCAATGATGAGGATGACGATGGAAGTGTAGGTCTAAATAATAGGAATGGAAGTGATAATGGTAGTGGCACTCAGTCCTCATGGACCAAACAAGTTGTGGAAATTGAAAGTCCCAAACAGGTGCCTGGGTGGGATCAAATAGCAGAGTTTCCTCATAGTACCTGTGCTCAAGTTGTTCTCCCCAATGCCAAAATATGTGGTAACAAGATGGTTCCTACAGCCACAAAGTGTTGTGCCAAGCAAAGAGAACAATATGAGCTGAAAGTTGACTCAAGTAGAGAACTTCACTTAACTCTTGACTACAGAAATGAGGTTCCAGTCAGAACTGCAGGCGCAAAAAATAGTATTTCTCTTGATATAGGCTTCTCTAAATTCAATGAGCAGATTAGTGGAGGACAGCTGGATTTTAATTGTGAGAATCCTTCTAGCCAGCTAAGGATCAAAGGTACTTCAGTGTCTGATGCCATTACTGGCACCTCTGATTCTCAGGTGCTTGGTGGAAAATTTGAAGCCCAAGATAGAATACTCAAGCCCTCAGATATCAAAAATAAAGCTAATAATAATGTTGAAGAATTGCCATCTCTTGAGACCAGTTTAAAGAGACTTAGAGGGGTTAAATATGCTGGAATTACAACTCAGGATGATCGGAACGTTATAAGACGTTCAGACCTTTCAGCCTTCTCAAGGTACAATGCAAGCTCTAACGCTAATAAGTCTCCCATTGGATGTGTTGGAACCGGAAGCAACTCTCCACATAATAATAGCTTAGAAGTTGCAAAGAAAGATTCATCACATGAAATTCATTCTCATTCTAGTGGCAATCCTCCTCAACAGAACTCAAATGGCGCAAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTTTACTAAGACTGCAATTATAAGTGAGCCAGCAGTAGCATCAACAGCCAAAAGTTTGCACCAATCATCTGCTTTCCTGCCTATAACAAATGACCTTACACGTACCTCTCAACGAGTATTACATAGTAACAAAGCTATGACTGCTACAACAGTGCTGGCACCAAAAGGAGGCACACATATGGATTCTCCAAATGAGGACTTCCATCACCATTTTGAAAACCATGACAGTACTGCTTACAACATGCAGCCCCAGCTGCCACCTGAGCATGATGATTCAACATTAAAGGAAATGGATGATGCTGCACCACATTGTGGGTCATCAAATGTAGTGGAAGTGCTGGTTGAAGGTAATATTGGAAATTACAGTGTCAATAAAAGTGCATCAGGCAGCAACAATGGAAGCAATGGACAAAATGGGAGCAGCAATGCATTTTATGCCAGGGGAACTATCATAGAGAGTGACAATGAAATTGCAAGAAGTAGTGCAAGTGGTGATGCTAGTGGGAGTAAGAGTGGGAGTGGGAATGAGAGTGCTAACAGAGTAGATCAAAACAAGACTTCTAAAAGAGAAGCATCCTTAACTAAGTTTTGCCACAAGAAAAAGGAGAGGTGCTTCCGGAAACAGGTCCGATATCGAAGTAAAAAGAAGTTAGCTGAACAACAACCTCACTTTCGAGAACAATTTACACAAAAGTCGACAAACGAAAATGCAGCTGAGGCAACAGATAGTTGA 2376 0.4125 MTRGVLMSVNGDDEELQELTHRLRVGEKTFKEGVTGEEHRLHEDNELKANGIAEEVKDGQGGAVKAPVVQSIPKQQPQGAIVCWERFLHIRSLKVLLVENDNSTRHVVTALLRNCSYEVIEAANGLQAWKMLEDLTNHIDLILTEVAMPCLSGIGLLCKIMGHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSGSGSGSESGTQTQKSVKSKSLEKSGNNTGSNDEDDDGSVGLNNRNGSDNGSGTQSSWTKQVVEIESPKQVPGWDQIAEFPHSTCAQVVLPNAKICGNKMVPTATKCCAKQREQYELKVDSSRELHLTLDYRNEVPVRTAGAKNSISLDIGFSKFNEQISGGQLDFNCENPSSQLRIKGTSVSDAITGTSDSQVLGGKFEAQDRILKPSDIKNKANNNVEELPSLETSLKRLRGVKYAGITTQDDRNVIRRSDLSAFSRYNASSNANKSPIGCVGTGSNSPHNNSLEVAKKDSSHEIHSHSSGNPPQQNSNGASNNIDMGSTTNNAFTKTAIISEPAVASTAKSLHQSSAFLPITNDLTRTSQRVLHSNKAMTATTVLAPKGGTHMDSPNEDFHHHFENHDSTAYNMQPQLPPEHDDSTLKEMDDAAPHCGSSNVVEVLVEGNIGNYSVNKSASGSNNGSNGQNGSSNAFYARGTIIESDNEIARSSASGDASGSKSGSGNESANRVDQNKTSKREASLTKFCHKKKERCFRKQVRYRSKKKLAEQQPHFREQFTQKSTNENAAEATDS 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2936 791 MobiDBLite consensus disorder prediction 218 281 - -
Dere01g2936 791 ProSiteProfiles CCT domain profile. 737 779 IPR010402 GO:0005515
Dere01g2936 791 MobiDBLite consensus disorder prediction 759 791 - -
Dere01g2936 791 FunFam Two-component response regulator-like PRR37 93 257 - -
Dere01g2936 791 MobiDBLite consensus disorder prediction 771 791 - -
Dere01g2936 791 ProSiteProfiles Response regulatory domain profile. 94 212 IPR001789 GO:0000160
Dere01g2936 791 PANTHER TWO-COMPONENT RESPONSE REGULATOR 93 286 IPR045279 GO:0009736
Dere01g2936 791 MobiDBLite consensus disorder prediction 489 509 - -
Dere01g2936 791 SMART REC_2 93 208 IPR001789 GO:0000160
Dere01g2936 791 Gene3D - 92 247 - -
Dere01g2936 791 MobiDBLite consensus disorder prediction 489 544 - -
Dere01g2936 791 MobiDBLite consensus disorder prediction 521 544 - -
Dere01g2936 791 SUPERFAMILY CheY-like 91 216 IPR011006 -
Dere01g2936 791 MobiDBLite consensus disorder prediction 705 742 - -
Dere01g2936 791 Pfam Response regulator receiver domain 95 206 IPR001789 GO:0000160
Dere01g2936 791 Pfam CCT motif 737 778 IPR010402 GO:0005515
Dere01g2936 791 MobiDBLite consensus disorder prediction 705 729 - -
Dere01g2936 791 CDD psREC_PRR 95 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2936 Dere-ChrDere01 43976826 43984680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2936 169 790 Response Regulator Gene Family AT5G02810 42.476 2.70e-103 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Dere01g2936 Response_reg 6.2e-21 CL0304