Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2930 ATGCCGCCTAAGCAGCAATCGAAAGCTGATTTAGCGAAGAAGCAGAAGGTCGTAGAAGATAAAACCTTCGGTCTAAAAAACAAGAACAAGAGCAAAAATGTCCAGAAATACGTTCAGAGCCTCAAGCAGTCCGTACAGCCCAAGCCCGATCCTTCCAAAGTCGCTGCCAAGAAAAAGAAGGAGGATGAGAAGGCCAAGGAGAAGGAGCTAAATGATTTGTTCAAAATCGCTATTACCCAGCCTAAAGTGCCCGTTGGTGTTGATCCCAAGTCCATAGTATGTGAGTTTTTTAAAGCGGGACAGTGTACCAAGGGCTTTAAATGCAAGTTCTCACACGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGATCAGCGCAACCAGGAAACGATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCAAAGAAAACTGAGTATAATCAGAACAAACCAACTGATATAGTCTGTAAATATTTTTTGGATGCAGTGGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAGAACTGCCATTATAGGCATGCCCTTCCTCCTGGATATGTTTTAAAATCTCAAATGAAGGCCCTGTTAGAGGAAGAAGCTGAAAAAATTCCAATTGAGGACGAGATTGAAGATCAGCGCTCCAAAGTGAAAACTACGACTCCTATGACTCCTGAGTTATTCATGCAATGGAAGAAGAAGAAGATTGAAGAAAGAGATGCCAATTTGGCTCTGCAACAGGCAGAGAGAGCTAAGAATGACCGCATGAGTGGTCGTGAGCTATTTCTGTCAGATGCTAGCTTGTTCGTGGATGATGCTGAGGCATATGACAAGTATCAAAGAGAGCCAGAATCTGACGATACTGAGCAGAAGGAGAATGGGAACGCTGGTGATGGTCCTAGCACCTCTACAGCAGCGCGTGCTGATGCTGATGGAGAAGCTAATGCTGAAGTTGCCGATGATGATGATGATGATGAACTAGACATGGATGAATTGAATGAATTGGAGGCAAGTTTGTCAAAAACATCAATCCAAATAAAGGAGCCAGAAGGCGAAGCTTAA 1098 0.4381 MPPKQQSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDPSKVAAKKKKEDEKAKEKELNDLFKIAITQPKVPVGVDPKSIVCEFFKAGQCTKGFKCKFSHDLNVQRKGEKIDIYSDQRNQETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLDAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEEAEKIPIEDEIEDQRSKVKTTTPMTPELFMQWKKKKIEERDANLALQQAERAKNDRMSGRELFLSDASLFVDDAEAYDKYQREPESDDTEQKENGNAGDGPSTSTAARADADGEANAEVADDDDDDELDMDELNELEASLSKTSIQIKEPEGEA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2930 365 Pfam DRG Family Regulatory Proteins, Tma46 215 301 IPR032378 -
Dere01g2930 365 MobiDBLite consensus disorder prediction 291 340 - -
Dere01g2930 365 Coils Coil 246 266 - -
Dere01g2930 365 Coils Coil 53 73 - -
Dere01g2930 365 Gene3D - 87 202 - -
Dere01g2930 365 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Dere01g2930 365 Gene3D - 203 279 - -
Dere01g2930 365 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Dere01g2930 365 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Dere01g2930 365 MobiDBLite consensus disorder prediction 39 62 - -
Dere01g2930 365 SUPERFAMILY CCCH zinc finger 89 113 IPR036855 GO:0046872
Dere01g2930 365 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Dere01g2930 365 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 362 - -
Dere01g2930 365 MobiDBLite consensus disorder prediction 291 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2930 Dere-ChrDere01 43943098 43945985 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere01g2930 DFRP_C 4.1e-17 No_clan