Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2925 ATGGCTGCCGCTGCTCGCCCCCTCGTCACTGTCCAGTCCCTCGAGGGTGACATGGTCACTGATGCTACCCCAACCGTTCAGCTTCCGGATGTCATGAAGGCAGCCATTCGCCCCGATATCGTCACCTTCGTCCACTCCAACATTTCCAAAAACAGTCGCCAACCCTACGCCGTCAGCAAGCGCGCCGGTCACCAGACCTCCGCTGAATCATGGGGTACCGGCCGTGCAGTCTCTCGTATCCCCCGTGTCCCCGGCGGCGGTACCCACCGTGCCGGTCAGGGTGCTTTTGGTAATATGTGTCGTGGCGGTCGTATGTTTGCTCCTACCAAGATTTGGCGCCGCTGGCATCGTAAGATCAATGTCAATCAGAAGCGCTACGCAATCGTTTCGGCCATTGCTGCCTCGGCAATTCCATCACTTGTTATGGCTCGTGGTCACAGAATTGAGTCTGTGCCCGAAATGCCTCTTGTGGTCAGCGATTCTGCCGAGAGTGTCGAGAAGACTAGGGATGCCATCAAAGTGCTGAAGCAGATCGGCGCCTTTCCCGACGCTGAGAAGGCTAAGGACAGCCACTCCATCCGTCCTGGTAAGGGTAAAATGAGAAATCGCCGATACATCTCTCGTAAGGGTCCTCTAATTGTGTATGGAACTGAGGGTGCCAAGGCGGTGAAAGCTTTTAGGAACATTCCAGGGGTTGAGGTTGCCAATGTGGAGAGGCTGAACCTTCTTAAGTTGGCTCCCGGTGGTCATCTTGGTAGGTTTGTTATTTGGACTAATTCTGCTTTTGAGAAGCTTGATTCGGTTTATGGGTCATTCGATAAGCCATCAGAGAAGAAGAAAGGGTACTTGCTTCCAAGGGCCAAGATGATTAATTCTGACTTGGCCAGGATCATCAACTCCGATGAGATTCAATCCGTTGTGAGGCCCATCAAGAAGGAAGTTAAGAGGGCACCATTGAAGAAGAACCCGCTCAAGAATCTGAATGCTATGTTGAAGCTGAATCCATATGCTAAGACTGCTAAGAGGATGGCTCTTCTTGCTGAGGCTGAACGGGTTAAAGCAAAGAAAGAGAAGCTTGACAAGAAGAGGAAGATTGTCTCTAAGGAGGAGGCTTCTGCTATTAAGGCAGCAGGAAAAGCATGGTATCAAACTATGGTGTCGGACTCTGATTACACAGAATTTGAGAACTTTTCAAAGTGGTTAGGTGTTTCACAGTGA 1218 0.5082 MAAAARPLVTVQSLEGDMVTDATPTVQLPDVMKAAIRPDIVTFVHSNISKNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAIVSAIAASAIPSLVMARGHRIESVPEMPLVVSDSAESVEKTRDAIKVLKQIGAFPDAEKAKDSHSIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTNSAFEKLDSVYGSFDKPSEKKKGYLLPRAKMINSDLARIINSDEIQSVVRPIKKEVKRAPLKKNPLKNLNAMLKLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKIVSKEEASAIKAAGKAWYQTMVSDSDYTEFENFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2925 405 Coils Coil 342 369 - -
Dere01g2925 405 SUPERFAMILY Ribosomal protein L4 9 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Dere01g2925 405 Pfam Ribosomal protein L4/L1 family 26 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Dere01g2925 405 PANTHER 60S RIBOSOMAL PROTEIN L4 4 398 IPR045240 -
Dere01g2925 405 MobiDBLite consensus disorder prediction 55 96 - -
Dere01g2925 405 MobiDBLite consensus disorder prediction 55 73 - -
Dere01g2925 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Dere01g2925 405 FunFam 60S ribosomal protein L4 3 308 - -
Dere01g2925 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Dere01g2925 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2925 Dere-ChrDere01 43913205 43915137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2925 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.663 0.0 686