Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2924 ATGTTGGATCTTAATCTCAACGTCGGTTCCTCTGATTCTGCATCGAATTCCGTCGACATGCCGACTGAGAATGTTCTGCTGCTTTCTGGTAGCCAAATGGATAGCTCTGGAAGCTTTAATTCTTCCGTCGTCAATGCCGATACCTCCACCAACACTTGCGACGAAGATTCTTGCTCTTATGGTGATGCCTTTGCTCACAACTTCGAAATATTAAAGAAGAACACTATAGATGAGGGCACAAGCTCCAAAGCAGTTAATCTTGCCGTAGATGAAGGTGAAGATGGCTTTAATCGAACCATCCAGCTTTTCCCGATCGCCGGAGCCCAAGAGGCTCATGTCCCTGAATTGGGAATCGGCCAGCGGCTTCCTGATTCGTCTTCAGGTAAGGGATGGTTGGATTTCTTGTGTAAGAAGGTGGGTGACGGGGGAAGGCCGGAGCAGAGGATGCTACCTCCGCAGCAGCAGAGACCGCAGGTCAAGAAGAGCCGGCGGGGACCCAGGTCGAGGAGCTCGCAGTATCGCGGCGTTACATTTTATCGACGAACTGGAAGATGGGAATCGCATATATGGGACTGTGGGAAACAAGTGTACTTGGGCGGATTTGATACAGCGCATGCTGCGGCAAGGGCATATGATCGAGCCGCCATCAAGTTCCGTGGCCTTGATGCAGATATCAATTTCAACGTTAGTGATTATGAGGAAGATATAAAGCAGATGAGTAACTTCACAAAGGAAGAATTTGTGCATATTCTGCGTCGACAGAGCACTGGTTTTTCAAGGGGAAGTTCAAAATATAGGGGAGTTACTCTGCATAAATGTGGGCGATGGGAAGCTCGTATGGGGCAGTTTCTTGGGAAAAAGTATATATATCTCGGGCTATTCGATAGCGAAATAGAGGCTGCAAGGGCATATGATAAGGCGGCTATAAAATGCAATGGGAGGGAAGCTGTCACAAACTTTGAGCCTAGCACATATGAAGGTGAGATAATCTCTCGGGCAGATAATGAAGATGGCAACCCAAATCTTGATCTTAGCTTGGCCATAGCTCCCCCTGCTTACTCTGATGGTTTCCAAGTTCAGTATGGCTGGGCAAACATGCCTGTTGATGGGAGTGTTACGTTTCAGCAATCTGCATCAAGATCACTGAAGGCTCAGCCGTCTCATGTTTTTCCGATTGCTTCTGAGCATCCTTCTGTCTGGAATAGTACCAGTTTCTTTCCCATCAGTCAGGAAAGAGCAATGGAGAAAAGAATGGAAGTTAATTCCGTGCCAAACTGGGTATTCCAAGTCCAAGGTCCTTACAGCGGGACAACTTTGATTCCATCCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTCCAACAAGATTACCTTCAGCAGCTGATAGTCAAAATCTTTTTCCAAACATGACGATCCATCCTCAATTTTCTTCATCAATCACTAACTCCAGCATCCTGTCCCCTTTCTAA 1470 0.4701 MLDLNLNVGSSDSASNSVDMPTENVLLLSGSQMDSSGSFNSSVVNADTSTNTCDEDSCSYGDAFAHNFEILKKNTIDEGTSSKAVNLAVDEGEDGFNRTIQLFPIAGAQEAHVPELGIGQRLPDSSSGKGWLDFLCKKVGDGGRPEQRMLPPQQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNVSDYEEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAAIKCNGREAVTNFEPSTYEGEIISRADNEDGNPNLDLSLAIAPPAYSDGFQVQYGWANMPVDGSVTFQQSASRSLKAQPSHVFPIASEHPSVWNSTSFFPISQERAMEKRMEVNSVPNWVFQVQGPYSGTTLIPSFSAAASSGFPSPTRLPSAADSQNLFPNMTIHPQFSSSITNSSILSPF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2924 489 MobiDBLite consensus disorder prediction 142 173 - -
Dere01g2924 489 Gene3D AP2/ERF domain 263 322 IPR036955 GO:0003700|GO:0006355
Dere01g2924 489 Gene3D AP2/ERF domain 171 230 IPR036955 GO:0003700|GO:0006355
Dere01g2924 489 PRINTS Ethylene responsive element binding protein signature 303 323 IPR001471 GO:0003700|GO:0006355
Dere01g2924 489 PRINTS Ethylene responsive element binding protein signature 265 276 IPR001471 GO:0003700|GO:0006355
Dere01g2924 489 SMART rav1_2 172 234 IPR001471 GO:0003700|GO:0006355
Dere01g2924 489 SMART rav1_2 264 327 IPR001471 GO:0003700|GO:0006355
Dere01g2924 489 CDD AP2 172 230 IPR001471 GO:0003700|GO:0006355
Dere01g2924 489 ProSiteProfiles AP2/ERF domain profile. 264 321 IPR001471 GO:0003700|GO:0006355
Dere01g2924 489 CDD AP2 263 323 IPR001471 GO:0003700|GO:0006355
Dere01g2924 489 FunFam AP2-like ethylene-responsive transcription factor 171 230 - -
Dere01g2924 489 SUPERFAMILY DNA-binding domain 171 230 IPR016177 GO:0003677
Dere01g2924 489 Pfam AP2 domain 263 313 IPR001471 GO:0003700|GO:0006355
Dere01g2924 489 Pfam AP2 domain 172 220 IPR001471 GO:0003700|GO:0006355
Dere01g2924 489 SUPERFAMILY DNA-binding domain 263 322 IPR016177 GO:0003677
Dere01g2924 489 ProSiteProfiles AP2/ERF domain profile. 172 228 IPR001471 GO:0003700|GO:0006355
Dere01g2924 489 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 141 345 - -
Dere01g2924 489 FunFam AP2-like ethylene-responsive transcription factor 263 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2924 Dere-ChrDere01 43907544 43910154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2924 159 347 AP2-EREBP Transcription Factor Family AT4G36920 81.026 2.92e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere01g2924 AP2 1.2e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2924 01 43907544 43910154 Dere01g2924 01 43907544 43910154 ECH