Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2918 ATGGCTGAAGCTCCAGTTAGTCCTGGCGGTGGCGGTAGCCACGAGAGCGGTGACCAGAGCCCCCGCTCTAATGTCCGAGAGCAGGACAGGTACCTACCCATAGCAAATATCAGCCGGATCATGAAGAAGGCGCTTCCTGCTAATGGAAAAATCGCCAAGGATGCCAAGGAGACCGTGCAGGAATGCGTTTCCGAGTTCATTAGCTTTATCACCAGCGAGGCGAGTGATAAATGTCAGAGAGAAAAGAGGAAGACGATTAACGGCGATGATTTACTTTGGGCAATGGCGACTCTAGGGTTTGAGGATTATATCGAACCACTGAAGACTTACCTGAATAGATACAGAGAGGGTGATACCAAGGGTTCAGCGAAGGGTGGAGAAGTATCTGCCAAGAAAGATGTTCAACCAAGTCCTAATGTTCAGTTTGCTCATCAACCTTCTTTCTCACAAGGTGTTAACTATACAAATTCTCAGGTAACCCACCTTCTCTTACTCCCATGCCATGATATATCTCTTCCTTCCTGA 525 0.4781 MAEAPVSPGGGGSHESGDQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKTYLNRYREGDTKGSAKGGEVSAKKDVQPSPNVQFAHQPSFSQGVNYTNSQVTHLLLLPCHDISLPS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2918 174 Gene3D Histone, subunit A 18 150 IPR009072 GO:0046982
Dere01g2918 174 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Dere01g2918 174 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Dere01g2918 174 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Dere01g2918 174 FunFam Nuclear transcription factor Y subunit B-3 20 143 - -
Dere01g2918 174 SUPERFAMILY Histone-fold 28 129 IPR009072 GO:0046982
Dere01g2918 174 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dere01g2918 174 MobiDBLite consensus disorder prediction 119 138 - -
Dere01g2918 174 MobiDBLite consensus disorder prediction 1 29 - -
Dere01g2918 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 141 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dere01g2918 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2918 Dere-ChrDere01 43856071 43857189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2918 1 166 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.713 3.79e-83 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere01g2918 CBFD_NFYB_HMF 1.2e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2918 01 43856071 43857189 Dere01g2918 01 43856071 43857189 ECH