Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2914 ATGACAGCAATTGTCGCCCATGCTGTCGGGATGGGGTTTCTCCGTGTCTGTGGCCGCTGCTCAATCTTCGACGACTTCGAGCAGTTCCAGAGGAGGAAGAACCAAGTAGCCGTCGCCATGGGGAAGACAAGAGGTATGGGAGCTGCCCGCAAGTTGAGGTCCCACCGTAGGAGGCAGAGGTGGGCAGACAAGGCATACAAAAAATCTCATCTTGGCAATGAATGGAAGAAACCTTTTGCTGGATCTTCCCATGCAAAGGGCATTGTTCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCGAACTCTGCCATTCGTAAGTGTGCTAGGGTTCAACTTATCAAAAATGGAAAGAAAATTGCTGCCTTTGTCCCTAACGATGGTTGCCTGAACTACATAGAAGAGAATGACGAAGTCTTGATTGCTGGATTTGGACGAAAGGGTCACGCCGTGGGTGATATTCCTGGTGTCAGATTCAAGGTTGTGAAGGTCTCTGGTGTCTCACTTCTGGCTCTCTTCAAGGAGAAAAAGGAGAAGCCAAGGTCTTGA 546 0.4908 MTAIVAHAVGMGFLRVCGRCSIFDDFEQFQRRKNQVAVAMGKTRGMGAARKLRSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2914 181 ProSitePatterns Ribosomal protein S12 signature. 98 105 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dere01g2914 181 Gene3D - 64 181 IPR012340 -
Dere01g2914 181 CDD Ribosomal_S23 65 178 IPR005680 GO:0003735|GO:0006412|GO:0015935
Dere01g2914 181 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 37 181 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dere01g2914 181 Pfam Ribosomal protein S12/S23 70 180 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dere01g2914 181 NCBIfam 30S ribosomal protein S12 45 180 IPR005680 GO:0003735|GO:0006412|GO:0015935
Dere01g2914 181 SUPERFAMILY Nucleic acid-binding proteins 59 179 IPR012340 -
Dere01g2914 181 FunFam 40S ribosomal protein S23 64 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2914 Dere-ChrDere01 43817059 43819692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2914 40 181 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.070 1.69e-95 271