Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2909 ATGAAGGCGATTGTGAATGATATAACAGTACAACAATACCAGAGCAATTTTATCCCTAATGTTTCTTTATTGTTCTTCCTGGACAAGTCAATCGCACTTTACATTATTAGTTTTCTTTATTGTTATAATAATCCACATTATTATTGATCTGCCACTTGGTTTTGGCTGAGGATCAAATTAAGGAATGCCAAGAAGATGGGGAGGAAGGGAAATTGGTTTTCTTCTGTGAAGAAAGCTCTCAGCCCTGAGTCAAAGAAAAAGGAAGATCAGAGATCAAACAAATCAAAGAAGAAATGGTTTGGGAAGCAAAAATTGGAGGCTTCAGACTCATACTTGGGTTCTGATAAAGCACCACCTACAGCTCCTCCTCCTCCACCTGAGGAGATTAAATCATCCGACGTTGAGAATGAAAACAGTCAAGTTCATGTTGTTGAAGTCGCAACTTCTGTGAATGCCGAGAGACCTGTTCCTGCTGTTCCGACAGCAGCTGTTGCAGCTCAAACCAGTTCATTTTCTCGGGTTGCTGGTAAATCAAAGGACGAAGTGGCTGCAATAAAGATTCAGACAGCTTTTAGGGGATATTTGGCAAGGAGAGCATTACGAGCTTTAAGAGGACTGGTCAGATTGAGGACACTGATGGAAGGGCCAGTTGTAAAACGCCAAGCTACTAGCACTCTCCGCTCAATGCAAACTTTAGCTCGTGTGCAATCTCAGATTCGTTCTAGGAGGATCAGGATGTTAGAGGAGAATCAGGCTCTGCAAAGGCAGCTCTTACAGAAGCATGCAAAGGAGCTTGAAAGCATGCGGATTGGAGAGGAATGGGATGACAGCACGCAATCCAAGGAACAAATTGAAGCCAAGTTACTACACAAGTATGAAGCTGCCATGAGAAGAGAAAAAGCGCTGGCTTATGCATTCTCTCATCAGCAAACATGGAAGAATTCATCCAGATCTATAAACCCAATGTTCATGGATCCAACTAATCCTTCCTGGGGATGGAGCTGGCTGGAACGATGGATGGCAGCGCGGACATGGGAAAGTCGTAGCGCGATGGAGAAAGATATGAATGATGAACGTTCATCTGTAAGAAGCTCTAGCCGCAGTATCACAGGTGGAGAGATCAGCAAATCATACGCTCGTTACCAACTCAATTCTGAAAAGCATTCTCCCACAGCTAGCCAAAATCCAGGTTCACCTAGCTTGCACTCAAATTCAACTCCTTCCAAGCCAGCTTCCAGGAAACTGAAGAAAGCAAGCCCAAAGGACAGCTTTGGTATGGATGATGACATTAAAAGTGTGGTCAGTGTGCAGTCAAGCCGGTTCCGGAGGCACTCTATTGGTGGCTCGTCGGTGAGAGACGATGAGAGCCTTGCGAGCTCACCGGCGGTTCCAAGTTACATGGTAGCAACTCAGTCTGCAAAAGCCAAGTCCAGGACGCAAAGTCCGTTAGCAGCAGAGAATGGGACACCACAGAAAGAGAAAGAGAGAGTGTCTTTTGGGACAGCAAAGAAACGGCTTTCTTACCCACCTTCACCGGCCAGGCCACGGCGGCTATCAGGTGGTCCACCGAAGGTAGAAAACAATTTAGTTGAAGAAATCAGTACGGCCAATGGTGGGGCTGCTTAA 1626 0.4563 MKAIVNDITVQQYQSNFIPNVSLLFFLDKSIALYIISFLYCYNNPHYYXSATWFWLRIKLRNAKKMGRKGNWFSSVKKALSPESKKKEDQRSNKSKKKWFGKQKLEASDSYLGSDKAPPTAPPPPPEEIKSSDVENENSQVHVVEVATSVNAERPVPAVPTAAVAAQTSSFSRVAGKSKDEVAAIKIQTAFRGYLARRALRALRGLVRLRTLMEGPVVKRQATSTLRSMQTLARVQSQIRSRRIRMLEENQALQRQLLQKHAKELESMRIGEEWDDSTQSKEQIEAKLLHKYEAAMRREKALAYAFSHQQTWKNSSRSINPMFMDPTNPSWGWSWLERWMAARTWESRSAMEKDMNDERSSVRSSSRSITGGEISKSYARYQLNSEKHSPTASQNPGSPSLHSNSTPSKPASRKLKKASPKDSFGMDDDIKSVVSVQSSRFRRHSIGGSSVRDDESLASSPAVPSYMVATQSAKAKSRTQSPLAAENGTPQKEKERVSFGTAKKRLSYPPSPARPRRLSGGPPKVENNLVEEISTANGGAA 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2909 541 PANTHER IQ-DOMAIN 5-RELATED 66 511 - -
Dere01g2909 541 MobiDBLite consensus disorder prediction 445 541 - -
Dere01g2909 541 ProSiteProfiles IQ motif profile. 180 208 IPR000048 GO:0005515
Dere01g2909 541 Gene3D - 149 206 - -
Dere01g2909 541 MobiDBLite consensus disorder prediction 375 412 - -
Dere01g2909 541 Pfam Protein of unknown function (DUF4005) 440 519 IPR025064 -
Dere01g2909 541 MobiDBLite consensus disorder prediction 463 487 - -
Dere01g2909 541 SMART iq_5 179 201 IPR000048 GO:0005515
Dere01g2909 541 MobiDBLite consensus disorder prediction 110 140 - -
Dere01g2909 541 Pfam IQ calmodulin-binding motif 183 201 IPR000048 GO:0005515
Dere01g2909 541 MobiDBLite consensus disorder prediction 375 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2909 Dere-ChrDere01 43795851 43800887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2909 66 541 IQD Protein Family AT5G03040 52.469 1.23e-143 420
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2909 01 43795851 43800887 Dere02g0977 02 9252960 9258200 CCT
Dere01g2909 01 43795851 43800887 Dere01g2909 01 43795851 43800887 ECH