Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2895 ATGGGACATAGACATTTATATGGCATATCTCATATGTTTGAGAGTGAGCATGACCAGAATTGGAATCATATGCAAACTGATCAACATTATGTGCAACTAGGTAGTACTAGCACTTCAGAGAATGGTTCTTTTATTTATCCTGTAGAAAATATGTCTATCGATGGTAGCTCTTTCACCACTCCTTGGAACAATGTCACAAGGTCAAATGGATATGTATCCTCAAGTATCAATATTGAAGTCCCTCCTCATCAATCAGAGGCATCAGCATCTTCTCATGATCATTTTTTGCATTCATCAAATCCTGGAGCCTTTTTTGCAGTTTCTGAAAACTATGCTCACCAACCTTCTTCTTCCAATTACGATAGACAAGCATTTCACGTTGCTGATGGTGGTTTTATTGATCTAACAGTGGGAAATGGAAGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCATCAAACTGTGAGAGAGGCAGTACAAGCAGATTTTTTAATGCAGGAAGTTCAATTGATCTTCCTATATCTTCAGAAATAAGGCAGCAGAAGCCAAGCGTGGATTCTCAATATTTGCCTTGGGATCATGTCACTATGACACCCACCTTCAGAGGCAGTGGCCTTTCAATCCGGGGTGAGGGTTCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTTGCAAGGACCCATTTATCTAGCAATCTTTCACACAATTTCCCTACTGGCCCCCCCATTGACCATTCTAGCACAATGGATCATTCTGGTCAGAGTTCCAGTACTATGACAAGGGATTGGAACCAAATGAACATATCTCCTGCTCATGGGAGGGTGTTATTATCTGAATCAAGTGCATATAATCACGAGCCAAGTCACTTACTCGTCGGAAGTGGTGCTAGTAATGCTGCGGTAGATGTTGGGGGTTACCATCATGAATATAATACAAGCATAATTCCTGCTGTTCCTCAAAGTTTTCATGGTAACCCCACTCACAATGCTAGGGGGGTTCGAAGTAACTATTCTCAAAGATCAACTCTAACTCCAACTTTTGGGGCCTCTTCAAGCTTGCGCTCAGGACACATGGTGCCTTTGGATGATGGATTGCACATGGTAGCTGAAGGTTTCCCTGCTAGACATCCAAGACCATTGACCAGTATCGGCTGGCGGAATAGTGACAGAAATGGGAGGTCAAGGATATCTGGCGATAGATATCGATCATTGGCTGATGAGGCTGTTCTCCATGATCGATTTTCCTCTGAGGGTTTCATGGTTGTTGATCGCTCATCAGTATATGGATCCAGAAGTGTGTTTGATCAGCATAGAGACATGAGGATGGACATAGACAGTATGAGCTATGAGGAACTACTTGCACTTGGAGAGAGGATTGGCCATGTCAGCACCGGATTGTCTGAGAATTTGATTTCAAAGTGTTTGACAGAATCAATATATTGTTCATCTGAGCAAAATCAAGAGGAAGGAAGTTGTGTGATCTGTCTGGAAGAGTACAAGGACATGGACGATGTTGGGACATTGAGAAGTTGCGGCCATGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCTATGAAGAACCTATGTCCTATCTGCAAAACTTCTGCTCTTCCTGATAATATGAAGGATAAATAA 1653 0.4265 MGHRHLYGISHMFESEHDQNWNHMQTDQHYVQLGSTSTSENGSFIYPVENMSIDGSSFTTPWNNVTRSNGYVSSSINIEVPPHQSEASASSHDHFLHSSNPGAFFAVSENYAHQPSSSNYDRQAFHVADGGFIDLTVGNGRGPHKRKSPGIPSNCERGSTSRFFNAGSSIDLPISSEIRQQKPSVDSQYLPWDHVTMTPTFRGSGLSIRGEGSLRNVRSRSALDLESNLARTHLSSNLSHNFPTGPPIDHSSTMDHSGQSSSTMTRDWNQMNISPAHGRVLLSESSAYNHEPSHLLVGSGASNAAVDVGGYHHEYNTSIIPAVPQSFHGNPTHNARGVRSNYSQRSTLTPTFGASSSLRSGHMVPLDDGLHMVAEGFPARHPRPLTSIGWRNSDRNGRSRISGDRYRSLADEAVLHDRFSSEGFMVVDRSSVYGSRSVFDQHRDMRMDIDSMSYEELLALGERIGHVSTGLSENLISKCLTESIYCSSEQNQEEGSCVICLEEYKDMDDVGTLRSCGHDYHVSCIRKWLSMKNLCPICKTSALPDNMKDK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2895 550 ProSiteProfiles Zinc finger RING-type profile. 497 539 IPR001841 -
Dere01g2895 550 MobiDBLite consensus disorder prediction 138 158 - -
Dere01g2895 550 Pfam Ring finger domain 496 539 IPR001841 -
Dere01g2895 550 MobiDBLite consensus disorder prediction 324 358 - -
Dere01g2895 550 SUPERFAMILY RING/U-box 487 543 - -
Dere01g2895 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 462 543 IPR013083 -
Dere01g2895 550 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 462 543 - -
Dere01g2895 550 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 109 543 IPR045191 GO:0061630
Dere01g2895 550 MobiDBLite consensus disorder prediction 324 360 - -
Dere01g2895 550 SMART ring_2 497 538 IPR001841 -
Dere01g2895 550 MobiDBLite consensus disorder prediction 236 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2895 Dere-ChrDere01 43676028 43678685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2895 1 549 C3H Transcription Factor Family AT2G37150 41.711 3.39e-114 348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2895 01 43676028 43678685 Dere01g2895 01 43676028 43678685 ECH