Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2892 ATGAAACAGACGTGTGAATATCTACAGTACAGAAAAACTAATGGAGAGGTGTCCCGCGAAGCCGAAGTAGGTGCACTGCGGATGAGCGTCATCGACATTCTCACCAGAGTTGATTCGATCTGCAAGAAGTACGACAAATACGACGTCGACAAGCCTAAGGATTCCAATATCACCGGCGACGATGCCTTTGCTCGACTCTACGCCGTAGTAGAAGCCGACATCGAGGCTGCACTTGAGAAAGCTGCAAATGCTTCCAATGAGAAAAACAGAGCATCTGCCGTTGCCATCAATGCTGAGATTCGTCGCACAAAAGCTCGTTTGCTGGAAGAGGTCCCCAAGTTGCAGAGATTGGCTGTAAAGAAGGTTAAGGGGCTTTCATCAGAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCACTGCCAGTGAGGATCCAAGCTATTCCCGATGGGACCCCTGCTGCACCCAAAAAAAGGGGAGGTTGGGCAGCTTCTGCCTCGCGTACTGAAATCAAGTTTGATTCTGATGGGCAGTTTGACACTGAATACTACCAACAAACAGAGGAGTCAAGTAAATTTCGGCAGGAGTTTGAAATGCGGAAAATGAAGCAGGCAAGTCATTTTTCACAGGGGAGAGAGAGAATTTTTGATCAAGGTTTGGATATGATTGCAGAAGGCTTAGATACATTGAAAAACATGGCGCATGATATGAATGAGGAACTAGATAGACAAGTTCCACTGATGGATGAGATTGACACCAAGGTGGACAAAGCATCCTCTGACCTAAAGAATACAAATGTCAGGCTTAAAGACACGGTGAACCAGCTTCGATCCAGTCGAAATTTCTGTGTTGACATTATATTGTTGATTATAATTTTGGGAATTGCTGCCTATTTATACAAATATGCGTTTGTCCTTTACAGTCAAATCCGTCACCCCGTGTATGCCTGGACGCCCGGATGCCATCTCGAAGACTTGCAGCTTGTTTTATCAAAATCGCTTCAGTGTATCCACAACGAATCGGGCACTGATATTCTTCTCTTCATATACTTGTAG 1053 0.4501 MKQTCEYLQYRKTNGEVSREAEVGALRMSVIDILTRVDSICKKYDKYDVDKPKDSNITGDDAFARLYAVVEADIEAALEKAANASNEKNRASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSEEFAARNDLVLALPVRIQAIPDGTPAAPKKRGGWAASASRTEIKFDSDGQFDTEYYQQTEESSKFRQEFEMRKMKQASHFSQGRERIFDQGLDMIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCVDIILLIIILGIAAYLYKYAFVLYSQIRHPVYAWTPGCHLEDLQLVLSKSLQCIHNESGTDILLFIYL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2892 350 FunFam Syntaxin 6 216 279 - -
Dere01g2892 350 SMART tSNARE_6 202 271 IPR000727 -
Dere01g2892 350 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Dere01g2892 350 Pfam SNARE domain 246 295 IPR000727 -
Dere01g2892 350 Gene3D - 208 270 - -
Dere01g2892 350 PANTHER SYNTAXIN 73 291 IPR045242 -
Dere01g2892 350 SUPERFAMILY SNARE fusion complex 211 269 - -
Dere01g2892 350 CDD SNARE_Qc 216 269 - -
Dere01g2892 350 Coils Coil 67 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2892 Dere-ChrDere01 43662639 43667023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2892 28 299 SNARE and Associated Proteins AT3G09740 73.723 1.66e-146 412