Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2889 ATGGATTCCCAGTTTGCCTCGCAACCCTATAGAGAAGGTCCCGCCATTCTTGTTTATAGTTCTCTTCAATTTGTGCTTGGTCTTCGTGTGGAAAATAGCATACAGATCCATTACTTTGTTACCAAACTTGAAAGTTCAGCTACCCCAATATGCCTGAATCCCCTGAAAGATCCTAACTTAGATGTTCAACTCCCTCCTGGATTCAGATTCCACCCTTCTGACGAGGAGCTCATTGTTCACTATCTCAGAAACAAAGTGACTTCATGCCCCCTCCCTGCTTCGTTCATTGCAGAAATAGATCTCTATAAGTACAACCCATGGGAGCTTCCGAGCAAGGCTTTGTTTGGAGAGGATGAGTGCTTTTTATTTACTCCGAGGGACAGAAAGTATCCGAATGGATTGAGGCCTAATAGAGCAGCAGGTTCAGGTTACTGGAAGGCTACGGGAACTGATAAACCTATTCTTACTTCATGTGGGATGAAGAGCATTGGAGTGAAGAAAGCCCTTGTCTTCTACAAGGGTCGTCCCCCAAAAGGATCTAAAACTGATTGGATCATGCATGAGTATAGGTTGCTTGATTCAATGATCCCAAGTTCCAAGCAGAGGGGGTCTATGAGACTGGATGATTGGGTGCTATGCAGGGTTCGTCAAAAACTCAGCAGCCCAAGAAGCACTTGGAAAGACTCGAATGAATCGAGTTATGAACCAACGAGCTACTTTCAACAGATGAATTATGAGAATCCTAATCCTGAACCAGTCAAAATCTCTGTGGCCAATGAATTTCCCATGTTGCCATACATTCTAGCATCTAAGAGCACTCTTCCCTCCATTGGAATGGCCTCATCAAGCATAAGCTTTCAGCGTGATGATAATGGAAAGGGATATGCTGCAGTCCATGAAGACAACTCAAACATCATAGAAGCACAGTTCATAGTATCTTCTGCAGAGAGCTTGAAGAGAAAACACCATGAAGTGAACCAGTTCGACCTTTATTATGCGTCTCCCTTTAAGAAGCTGAGAGAGGAAGATCATGAGAGTGAAGTAATAGACATAGCTGCAAGCAAAGGCTACTCGAGTAGTTTCAACAACTTTGATCATTGGACTTCTATCATACAGCCTCAAGAGCTTAGTAACTTAGCCTTTGCAGGATATATTTGA 1158 0.4326 MDSQFASQPYREGPAILVYSSLQFVLGLRVENSIQIHYFVTKLESSATPICLNPLKDPNLDVQLPPGFRFHPSDEELIVHYLRNKVTSCPLPASFIAEIDLYKYNPWELPSKALFGEDECFLFTPRDRKYPNGLRPNRAAGSGYWKATGTDKPILTSCGMKSIGVKKALVFYKGRPPKGSKTDWIMHEYRLLDSMIPSSKQRGSMRLDDWVLCRVRQKLSSPRSTWKDSNESSYEPTSYFQQMNYENPNPEPVKISVANEFPMLPYILASKSTLPSIGMASSSISFQRDDNGKGYAAVHEDNSNIIEAQFIVSSAESLKRKHHEVNQFDLYYASPFKKLREEDHESEVIDIAASKGYSSSFNNFDHWTSIIQPQELSNLAFAGYI 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2889 385 ProSiteProfiles NAC domain profile. 64 218 IPR003441 GO:0003677|GO:0006355
Dere01g2889 385 SUPERFAMILY NAC domain 62 218 IPR036093 GO:0003677|GO:0006355
Dere01g2889 385 Gene3D NAC domain 73 221 IPR036093 GO:0003677|GO:0006355
Dere01g2889 385 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 63 299 - -
Dere01g2889 385 FunFam NAC domain-containing protein 72-like 73 223 - -
Dere01g2889 385 Pfam No apical meristem (NAM) protein 65 191 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2889 Dere-ChrDere01 43645085 43651363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2889 63 225 NAC Transcription Factor Family AT1G61110 67.251 9.84e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere01g2889 NAM 1.9e-35 No_clan