Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2888 ATGCAAACGATATCTGGTGACCCTTTCTCCTTATCCACTTCCATCGGAGGATTTGCTCCAGAACCAAACCCAAACCCTAACCCTAAGCTTATTCCCCCTCCGCTCCCTAAGAAGAAGAGAAATCTACCAGGAACGCCAGATCCAGATGCGGAGGTCATCGCTCTCTCGCCCAAGTCTCTCATGGCTACCAACCGATTCATCTGTGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCATCGAAGGGGACACAACCTCCCATGGAAGCTACGACAAAGGTCGAACAAGGAGGTACGGAAGAAGGTGTACATATGCCCAGAGAAGACATGCGTACACCATGACCCCTCCAGAGCACTGGGGGACCTCACCGGAATAAAGAAGCATTACAGCAGAAAACACGGGGAGAAGAAGTGGAAGTGCGACAAGTGTTCGAAGAAATACGCAGTCCAATCCGATTGGAAAGCTCACACCAAAACTTGTGGCACCAGAGAATATAAGTGCGACTGTGGTACCCTTTTCTCTAGGAAGGACAGTTTCATCACCCACAGAGCTTTCTGCGACGCCTTAACCGAAGAGAGTGCAAGACTCACCTCAGTTGGTACATCAGATTTAAATTTCAAGAACGAAGAGAGTATGATGAACTCCCACTCTCAGACTAGTTCCGCACATGGATTTGGCATTTCGCCATATGGTGCGCATGGATTTCATTCAGATTTTAATGGATTGGGCATGAGTATGGGTGGTGCTGACCAGCAAAGGCCAAGCCTGTCACTTTGGTTGAACCAGCTGGGAAATCCCCGCATTCATAATCCTCTGGATGTTGGACCTAATTCTGGCCTATATGTGTCATCATCAAGTTCTTCAGGTTTACCTGAGATCAATATGCAAATGCCTCAACCTAATAATGCCTTTGCTTCTTCTTCTTTGTCCAATTATACCCTATCTTCACTTCCTATTGGGAAAAAAGGTGAAAGTAGTGGAACTGGAAACTTGGCATCTATTTATAATTCAGAGGGTCAAAACATTCAACCAAAGCCAGCTTCTCCCATGTCAGCTACTGCACTTCTACAGAAAGCAGCACAGATCGGTTCAACCAGAAGCAGCAACCCTTCCATCTTTAGAGGCAGTTTTGGAGTGATAAGCTCGTCTTCCTCCCAGAATACGGCAAGTCTCGAAAATAACGCAGACCAAAACCGTAACAACGAGCTGAACCAGGTGTATCAGAGTATGAAGCAACCAGAGAATTTTAGTTCAAGCAGCAGCGGTGGGGGTACGATGGGGATAAGCAACAACTTCAGCTCATTGACTCATTCATCAAACAATGGTCTTGATGAGCTTGTGATGCAATCCCATGGAAGACAAAGTAGTAAACAAGTGCAACTGAAGCTGCATGCTGATTCAAACTCTGGGGAACATGGTTACACCAGGGATTTTTTAGGGATGGGTGGAGCAGGAGCAGGAGGAGCTGGCCCTCCCTTCCTACCCCAAGAGCTCGCTAAGTTTGCCTCCATAGCCTCACCCATGGGTATGTCTCAGTTCACTACTGGTACTACTCAGTAA 1572 0.4688 MQTISGDPFSLSTSIGGFAPEPNPNPNPKLIPPPLPKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEESARLTSVGTSDLNFKNEESMMNSHSQTSSAHGFGISPYGAHGFHSDFNGLGMSMGGADQQRPSLSLWLNQLGNPRIHNPLDVGPNSGLYVSSSSSSGLPEINMQMPQPNNAFASSSLSNYTLSSLPIGKKGESSGTGNLASIYNSEGQNIQPKPASPMSATALLQKAAQIGSTRSSNPSIFRGSFGVISSSSSQNTASLENNADQNRNNELNQVYQSMKQPENFSSSSSGGGTMGISNNFSSLTHSSNNGLDELVMQSHGRQSSKQVQLKLHADSNSGEHGYTRDFLGMGGAGAGGAGPPFLPQELAKFASIASPMGMSQFTTGTTQ 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2888 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 500 IPR031140 -
Dere01g2888 523 MobiDBLite consensus disorder prediction 416 440 - -
Dere01g2888 523 MobiDBLite consensus disorder prediction 326 354 - -
Dere01g2888 523 MobiDBLite consensus disorder prediction 1 20 - -
Dere01g2888 523 MobiDBLite consensus disorder prediction 453 473 - -
Dere01g2888 523 FunFam protein indeterminate-domain 12-like 45 113 - -
Dere01g2888 523 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Dere01g2888 523 MobiDBLite consensus disorder prediction 285 306 - -
Dere01g2888 523 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Dere01g2888 523 SMART c2h2final6 66 88 IPR013087 -
Dere01g2888 523 SMART c2h2final6 107 137 IPR013087 -
Dere01g2888 523 SMART c2h2final6 142 162 IPR013087 -
Dere01g2888 523 MobiDBLite consensus disorder prediction 453 469 - -
Dere01g2888 523 Gene3D Classic Zinc Finger 45 118 - -
Dere01g2888 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Dere01g2888 523 MobiDBLite consensus disorder prediction 21 41 - -
Dere01g2888 523 MobiDBLite consensus disorder prediction 1 50 - -
Dere01g2888 523 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Dere01g2888 523 Gene3D Classic Zinc Finger 120 199 - -
Dere01g2888 523 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2888 Dere-ChrDere01 43639289 43641074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2888 1 508 IDZ Gene Family AT5G03150 47.628 5.69e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g2888 zf-C2H2_jaz 7.7e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2888 01 43639289 43641074 Dere02g0587 02 5622639 5624572 CCT
Dere01g2888 01 43639289 43641074 Dere01g2888 01 43639289 43641074 ECH