Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2882 ATGGTGTTCCTCGGTGGAGCTTTACGCAATCCCATTATACCCGCCATCCAACGCTCTCGAAAGATTCCATCTTTCTCTTTCTCTTTCTGCGTGCCGTTCTATCAATGCTCTACCCTTTGGTTCGCATCCATTGCGAAGTGGAAAAAGGAAAAGGCTGCAGAACATCCGGTACATCTCGATTTTCTGTCTTCCATTGGAGAATCAGACAGAAATAAGAAAAGGGGATTACGGATATCTTTGTTCATTTCTCACGGTTTGAAAGAGGCCTATCATTTCATGGGTAACGTAGGAAGTAGCGGTGTCAACAGCCGTCGGCGAAGCAATAGCAGAGGGAGTCATCCGCCGCTTACGCCGCCGCCAGAAATCGCGGCAAGTCGGTTTGTGTATCCTGCATCTACACCTTACACATCACAATACCCAAACTCGAATCCTCCCCCGTATTTCCAGTACCCAGGTTACTATCCCGCACCACCCCAGGCTATGCCGATGCCTCTGCCGGCTTCTATTGATCACCACCATCGTATGGGGTCTCATCGACACATGGACCCATCATGGACGGCTGCACGTTACCATTGTGGGCCTGTTGTGCCTCCGCCTGCACCATATGTAGAGCATCAGAAGGCGGTGACCATAAGGAATGATGTTAATGTCAAGAAGGAGACTCTAAGGATTGAGCCCGATGAGGAGAATCCTGGGCGGTTCCTTGTGGCATTCACATTCGATGCCACCCTTGCTGGGAGCATCACCATACTTTTCTTTGCTAAAGAAGATGATGGCTGCATCCTTAAACCAATGAAGGAAAATATTCTTGCCCCTGTAACTGTTAGTTTCCAGCAAGGTCTTGACCAGAAGTTTAGGCAGCCAATTGGAACTGGTATTGACTTATCAATATTTGAGGAGTCAGAATTATTGAAAGTGGGTGAAATGGATATGTACCCTCTAGCAGTGAAGGCAGAAGCATCATACGGTAAACAAGATGTATCAAATGAAAGTCTAACATCTGGTGGCAGAAACTCACAGATAACTCAAGCAGTATTTGAGAAGGAGAAAGGAGAATTCCAGGTGAAGGTAGTTAAGCAGATCTTGTGGGTAAATGAAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGACGGGAATGATTCTGGAAAGGAGTGTGTCATCTGCCTCTCAGAGGCACGGGACACAGCTGTTCTTCCCTGCCGACACATGTGCATGTGTAGTGAATGTGCTAAGGTTTTAAGGTTCCAGACGAATAGATGCCCGATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATTAAAGTCAATAATAGTGACGTGCCTGAGGAATGA 1359 0.4673 MVFLGGALRNPIIPAIQRSRKIPSFSFSFCVPFYQCSTLWFASIAKWKKEKAAEHPVHLDFLSSIGESDRNKKRGLRISLFISHGLKEAYHFMGNVGSSGVNSRRRSNSRGSHPPLTPPPEIAASRFVYPASTPYTSQYPNSNPPPYFQYPGYYPAPPQAMPMPLPASIDHHHRMGSHRHMDPSWTAARYHCGPVVPPPAPYVEHQKAVTIRNDVNVKKETLRIEPDEENPGRFLVAFTFDATLAGSITILFFAKEDDGCILKPMKENILAPVTVSFQQGLDQKFRQPIGTGIDLSIFEESELLKVGEMDMYPLAVKAEASYGKQDVSNESLTSGGRNSQITQAVFEKEKGEFQVKVVKQILWVNEMRYELQEIYGIGNSVESDLDGNDSGKECVICLSEARDTAVLPCRHMCMCSECAKVLRFQTNRCPICRQPVERLLEIKVNNSDVPEE 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2882 452 ProSiteProfiles Zinc finger RING-type profile. 394 433 IPR001841 -
Dere01g2882 452 FunFam probable E3 ubiquitin-protein ligase LOG2 378 443 - -
Dere01g2882 452 SUPERFAMILY RING/U-box 393 439 - -
Dere01g2882 452 CDD mRING-HC-C3HC5_MGRN1-like 392 433 IPR045195 -
Dere01g2882 452 MobiDBLite consensus disorder prediction 100 122 - -
Dere01g2882 452 SMART ring_2 394 432 IPR001841 -
Dere01g2882 452 PANTHER MAHOGUNIN 93 445 IPR045194 GO:0061630
Dere01g2882 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 443 IPR013083 -
Dere01g2882 452 Pfam Zinc finger, C3HC4 type (RING finger) 392 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2882 Dere-ChrDere01 43607095 43610065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2882 184 413 C3H Transcription Factor Family AT3G09770 61.088 6.01e-94 285
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2882 01 43607095 43610065 Dere01g2882 01 43607095 43610065 ECH