LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g2881	ATGAAGATTCCTGGTTCATTTTTTACTTGTTTTTCAGCAACAGTAAAAGAACGACGCAAGCACGACGACCCAGAAGGAGGCAATTATGAAACGTTTCGTGTATTCTCTTACAGCGAATTGAAATTAGCCACTCGTGGATTTGATTCCTCGGACAAGGTTGGAGAAGGCGGATTTGGATCTGTATACAAGGGGCGGCTTCGGAATGGCAATATTGTGGCCGTGAAAGTGCTTTCAGTTGAGCTGGAATCCATGCGAGGAGAAAGGGAGTTTGTGGCAGAATTGGCTACACTCTCTCAGATCAAACATGAAAATCTAGTTCGTCTTCGAGGCTGTTGTGTGGACGGAGCTAAAAGATATTTAGTCTACGATTACATGGAAAGCAATAGCCTTCAACGCGCTTTCTTAGGCACAGAGCAAGGCAGAATGAGATTCACATGGGAATTAAGGAGGGACGTATCCATAGGTGTGGCTCGTGGGCTTGCCTATCTCCACGACCAACTAAACCCCCCTATTGTACATAGAGATATCAAACCCAGCAACATACTTCTTGATCAGAATTTCACACCTAAACTATCTGACTTTGGTTTCGCCAAGTTATTCAGGGACCAAAAGTCCTACGTCAGTACTAGAGTTGCCGGGACATTGGGCTATCTTGCTCCGGAGTATGCCACTTCTGGACAGTTGACGCGAAAATCAGATGTTTATAGCTTTGGAGTATTACTCTTGGAAATTGTTAGCGGCCTAGTAGCAGTGAATGCTTATGAGGATACAGATCGTTTCCTAGTACAGAAGGTGTGGACAGCTTATAAAGCTAACGATCTTGTAAAAATGGTAGATCCTGTGCTAATTAATGCGAGCTTGCCAGTGGAAGAAGCCATACGATTCCTAAAAGTGGGGCTGCTTTGCGTGCAAGAAACTGCCAAGCTTCGGCCAAGAATGACAGAGGCTGTTGAGATGTTGACTAACAATACTGACATGGAAGCTGTTCATATTTCAAAACCAGGCTTTGTTGCTGATCTTAGAAACATCAAAATAAGGCAGCAAATAATGCAGCATGAAACGCAGGAATCAAGTTCCAGTGGAGCAAACTATGGAAGTTCCATTTGGAGTTCCGTCAATCTTGCCCGTTAG	1131	0.4412	MKIPGSFFTCFSATVKERRKHDDPEGGNYETFRVFSYSELKLATRGFDSSDKVGEGGFGSVYKGRLRNGNIVAVKVLSVELESMRGEREFVAELATLSQIKHENLVRLRGCCVDGAKRYLVYDYMESNSLQRAFLGTEQGRMRFTWELRRDVSIGVARGLAYLHDQLNPPIVHRDIKPSNILLDQNFTPKLSDFGFAKLFRDQKSYVSTRVAGTLGYLAPEYATSGQLTRKSDVYSFGVLLLEIVSGLVAVNAYEDTDRFLVQKVWTAYKANDLVKMVDPVLINASLPVEEAIRFLKVGLLCVQETAKLRPRMTEAVEMLTNNTDMEAVHISKPGFVADLRNIKIRQQIMQHETQESSSSGANYGSSIWSSVNLAR	376

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g2881	376	ProSiteProfiles	Protein kinase domain profile.	47	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g2881	376	FunFam	probable LRR receptor-like serine/threonine-protein kinase RKF3	125	328	-	-
	Dere01g2881	376	Pfam	Protein kinase domain	49	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g2881	376	SUPERFAMILY	Protein kinase-like (PK-like)	29	320	IPR011009	-
	Dere01g2881	376	CDD	STKc_IRAK	53	322	-	-
	Dere01g2881	376	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	171	183	IPR008271	GO:0004672\|GO:0006468
	Dere01g2881	376	ProSitePatterns	Protein kinases ATP-binding region signature.	53	75	IPR017441	GO:0005524
	Dere01g2881	376	SMART	serkin_6	47	320	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g2881	376	Gene3D	Transferase(Phosphotransferase) domain 1	125	334	-	-
	Dere01g2881	376	FunFam	Serine/threonine-protein kinase receptor	17	124	-	-
	Dere01g2881	376	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	31	359	-	-
	Dere01g2881	376	Gene3D	Phosphorylase Kinase; domain 1	16	124	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g2881	Dere-ChrDere01	43603393	43605148	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g2881	34	339	Receptor kinase-like Gene Family	AT1G56120	46.906	5.70e-89	285

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Dere01g2881		Pkinase	1e-49	CL0016