Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2876 ATGATATCCTCACCCACCTTGCTTTTGTCTCGGTGCTCCGATTTCCGTCACAGAGGATGGTGCTTGAAATTGGATGCATCGTGTTTGGTCTTCGCGTCCTGTCGGAACGCTTTGAACATATCCGCAACTTCCCACGCAGCGGCCATGCCAAGCCTCAAAGAAACCCCTTTGTATAAATGCACTCTTATCCTCATCTCTCAACCTTATCACCCTTGCACGAACCCAGAGGCCTCTATTGTTCTCTGCTTCCCTCGCTCTCTAACTGCTCGCTCGGTTGCTATTGCCATGGCCAAGGACATCGAGGGAGCCACTCCTCACAAGGACTACCATGACCCACCTCCCGCTCCTCTCTTCGACGCCGCCGAGCTGGGCAAGTGGTCCTTCTACAGAGCTCTCATTGCCGAGTTCGTCGCCACCCTCTTGTTCCTCTACATCACTGTCTTGACTGTTATTGGCTACAAGAGCCAGACTGACCCCGCTCATAATGGAACTGGTTGCGACGGCGTTGGCATTCTCGGCATCGCTTGGGCCTTTGGTGGCATGATTTTCGTTCTCGTCTACTGCACTGCCGGCATTTCTGGAGGGCACATCAACCCAGCCGTGACGTTTGGGCTGTTTCTGGCGAGGAAGGTGTCGCTGATTAGAGCGATTATGTACATGGTGGCTCAGTGCTTGGGCGCAATATGTGGGTGTGGCTTGGTGAAGGCCTTCCAGAGCGCCTACTACAACAGGTACAATGGTGGTGCCAACATGTTGGCTGATGGCTACAGCAAAGGCACTGGGTTAGGTGCTGAGATTATTGGTACTTTCGTTCTTGTCTACACCGTCTTCTCTGCTACAGATCCCAAGAGAAACGCCAGAGACTCTCATGTTCCCGTGTTGGCTCCACTTCCAATTGGATTTGCGGTGTTCATGGTTCACCTGGCCACCATCCCCATCACCGGCACCGGCATCAACCCGGCTAGGAGCTTGGGACCTGCAGTCATGTACAACAATGAGAAGGCATGGGATGACCAGTGGATCTTCTGGGTCGGACCCTTCATTGGTGCTGCCATTGCTGCAATTTACCACCAATATGTGTTGAGAGCTCAGGCGGCCAAAGCTCTGGGCTCTTTCAGGAGCTCCTCCAATTTGTAA 1137 0.533 MISSPTLLLSRCSDFRHRGWCLKLDASCLVFASCRNALNISATSHAAAMPSLKETPLYKCTLILISQPYHPCTNPEASIVLCFPRSLTARSVAIAMAKDIEGATPHKDYHDPPPAPLFDAAELGKWSFYRALIAEFVATLLFLYITVLTVIGYKSQTDPAHNGTGCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGCGLVKAFQSAYYNRYNGGANMLADGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGPAVMYNNEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAQAAKALGSFRSSSNL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2876 378 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2876 378 PRINTS Major intrinsic protein family signature 264 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2876 378 PRINTS Major intrinsic protein family signature 340 360 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2876 378 PRINTS Major intrinsic protein family signature 178 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2876 378 PRINTS Major intrinsic protein family signature 300 322 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2876 378 PRINTS Major intrinsic protein family signature 215 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2876 378 Pfam Major intrinsic protein 123 357 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2876 378 FunFam Probable aquaporin PIP1-2 115 376 - -
Dere01g2876 378 Gene3D Glycerol uptake facilitator protein. 115 378 IPR023271 -
Dere01g2876 378 ProSitePatterns MIP family signature. 196 204 IPR022357 -
Dere01g2876 378 NCBIfam MIP family channel protein 134 356 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2876 378 SUPERFAMILY Aquaporin-like 123 362 IPR023271 -
Dere01g2876 378 CDD MIP 130 360 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2876 378 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 103 372 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2876 Dere-ChrDere01 43567822 43573417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2876 57 378 Major Intrinsic Protein MIP AT2G37170 75.000 1.01e-174 488