Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2871 ATGATTACGTTTATGGAGTCGAAGGACAAACTGAAAGAGGTGGAGAAGTGCTTGGATCCTCAGCTATGGCATGCTTGTGCTGGCGGGATGGTGCAAATGCCACCGGTGAACGCTAAGGTTTTCTACTTTCCTCAGGGTCACGCAGAACATGCATGTGGACCTGTGGACTTCAGGACTTGCCCCAAGGTTCCGCCACAAATTCTATGCAGAGTCGCAGCTATCAAGTACATGGCTGATCCTGAGACAGACGAGGTCTATGCCAAAATTAGGCTTCTTCCTCTTAATGCAAATGAGGCAGATTATGAAAATGATCGAATTGGCGGAATCAATGGTTCTGAAACGCAAGGTAAACCCGCTTCATTTGCCAAAACCTTGACACAGTCGGATGCCAACAATGGGGGTGGGTTTTCTGTTCCTAGATATTGTGCAGAGACAATTTTTCCTCGTTTAGACTACTCTGCAGATCCGCCCGTTCAGACCATCCTTGCTAAAGACGTTCATGGAGAAACATGGAAATTCAGGCACATTTACAGAGGCACACCGAGGCGCCATCTTTTGACGACTGGGTGGAGTACTTTCGTGAATCACAAGAAGCTTGTTGCTGGGGATTCAATTGTCTTTTTAAGAGCAGATAATGGAGATCTTTGCGTTGGAATTCGTCGAGCTAAAAGGGGAATTGGTGGTCGACCTGACTCTTCATCAGGGTGGAATTCAGCAAGTGGGAGTTGTCCTCTACCCTATGGAGGATTTTCGGCTTTTTTGAGGGAAGACGACAACAAATTATTAAGAAATGGTAATAGCAATGCATTGGGCTCAAGCGGGAGTGTGATGGGCAGAGGGAAAGTGAGACCCGAAACAGTCGTTGAAGCTGCAACTCTTGCTACCGAAGGCCAGTCATTTGAAGTTGTTTATTACCCGCGCGCAAGTACTCCAGAGTTCTGTGTGAAGGCCTCGTTTGTTAAAGCAGCACTGCAGATTAGGTGGTGTTCTGGAATGAGGTTCAAAATGGCCTTTGAAACTGAGGATTCCTCGCGGATAAGTTGGTTTATGGGAATTGTATCTTCAGTTCAAGTTGCTGATCCCATTCGCTGGCCTGATTCACCTTGGAGGCTTCTCCAGGTTACATGGGACGAGCCAGATTTACTTCAAAACGTGAAAAGGGTGAGCCCGTGGCTGGTTGAATTGGTATCGAACATGCCTGCCATCCATCCCCCCTCCTTCCCACCACCACTGAAAAAAATGAGATTTCCTCAACACCCAGATTTTCCCTTTGATAGCCAAATTGCTCTGCCATCATTTTCCACCAACATTCTAGGGCCTAGCAACCTCTTTAATTGTCTACCCGAAAGTTCTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTTTCCTTATCGGATCTCCACCTCAACAAACTGCAGTCAGGTCTATTTTCGGCTGGTTTCCCGCCTCTTGATCACACTGCTTCACCTTTGAGAATCTACAATAATCCCACAGTGAAAAAGCCCAGCACGAGTGAGAACGTTTCTTGCTTACTATCTATGGCAAGTTCTGCTCAGTCTTCAAAGAAACAGGATGATACGAAGACAACCCAGCTTGTGCTTTTTGGCCGAACTATACTTAGTGAACAGCAGATCTCGCTAAGTTGCTCTGGCGATACAATCTCCCCAGTTCTTACAGAAAATAGTTCATCAGATGGAAATGCTGATAAACTGACCAAGTTTTCTGATGGTTCTGGATCTGCTCTTCATCGGCAACGTCTACAAGAACGCTCTTCTTGTGAAAGGCTCCAAAGGTACAAGGATAATCGCCAAGAAATTGAGGCTAATTTAGAGACTGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTAGGTCGCACTATGGACCTCTCGCTGCTTGGGTCTTATGATGAATTGTATAGGAAGCTGGAAGACATGTTCAGCATTGAAAAATCTGAAATGGTAACCCGTATGCTTTACCGTGATATGACTGGGGCAGTCAAACGTATTGGGCAAGAACCATTCAGGGACTTTACAAAAACTGCCAGGAGGTTGACGATCCAAATGGATTCCAGCAGCAACAATGTAGGAGTGTAA 2106 0.4601 MITFMESKDKLKEVEKCLDPQLWHACAGGMVQMPPVNAKVFYFPQGHAEHACGPVDFRTCPKVPPQILCRVAAIKYMADPETDEVYAKIRLLPLNANEADYENDRIGGINGSETQGKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLCVGIRRAKRGIGGRPDSSSGWNSASGSCPLPYGGFSAFLREDDNKLLRNGNSNALGSSGSVMGRGKVRPETVVEAATLATEGQSFEVVYYPRASTPEFCVKASFVKAALQIRWCSGMRFKMAFETEDSSRISWFMGIVSSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPAIHPPSFPPPLKKMRFPQHPDFPFDSQIALPSFSTNILGPSNLFNCLPESSPAGMQGARHAHYGLSLSDLHLNKLQSGLFSAGFPPLDHTASPLRIYNNPTVKKPSTSENVSCLLSMASSAQSSKKQDDTKTTQLVLFGRTILSEQQISLSCSGDTISPVLTENSSSDGNADKLTKFSDGSGSALHRQRLQERSSCERLQRYKDNRQEIEANLETGHCKVFMESEDVGRTMDLSLLGSYDELYRKLEDMFSIEKSEMVTRMLYRDMTGAVKRIGQEPFRDFTKTARRLTIQMDSSSNNVGV 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2871 701 MobiDBLite consensus disorder prediction 561 590 - -
Dere01g2871 701 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Dere01g2871 701 Gene3D - 119 223 IPR015300 -
Dere01g2871 701 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Dere01g2871 701 CDD B3_DNA 120 221 IPR003340 GO:0003677
Dere01g2871 701 SUPERFAMILY DNA-binding pseudobarrel domain 115 224 IPR015300 -
Dere01g2871 701 SMART B3_2 121 223 IPR003340 GO:0003677
Dere01g2871 701 MobiDBLite consensus disorder prediction 561 589 - -
Dere01g2871 701 FunFam Auxin response factor 119 223 - -
Dere01g2871 701 Gene3D - 327 401 - -
Dere01g2871 701 Pfam Auxin response factor 290 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere01g2871 701 FunFam Auxin response factor 328 401 - -
Dere01g2871 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 691 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere01g2871 701 Gene3D - 612 699 - -
Dere01g2871 701 ProSiteProfiles PB1 domain profile. 615 695 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2871 Dere-ChrDere01 43496696 43499342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2871 14 701 B3 DNA Binding Superfamily AT4G30080 58.680 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere01g2871 B3 1.8e-21 CL0405