Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2866 ATGATATTCATCTTCGTGAGTAATTCAGCATGGCGAAGTGCTGTCTATGTCCTTGTCGTCACTCTATGTTCCTATGTTCAGGGTTCACTTTTCCGATTCACTGAGGACGGCAATGCTTTGAGCTTGACGTCAACCTTACATCAACATGCCCTACCAAGCACGAAATATGATCCACCTGTTTGGTCGGAAATAGGGCATTGTGGTGCTATTGGCGAAATTCAGTTTTTAGTTGCTATGTCTTCTGGTAGATCGAGATCTGTAAGGTTTTCGGATGATCCTGAGAGAGATATTTTAACGACAAGCACAGGAAGTCCCATGTCGACGCCGGCCTATAAGATGAATGCAAAAAGCATGTTATTGGAGGGAAAGAAACTTTCGAGGGTGTTTTCTGAGGATTATGATGCCTCGAAAAGAAAGATATTCGACCCCAGAGGACTAAGTCTAAACCGATGGAACAAAATGTTCTTAGTAGCATGTTTGATTTCACTATTTGTGGATCCCTTCTTCTTTTACTTGTCAGAGGCTAAGAAAGACAAGTGCATTGCTATGTCTGCTAGCCTCGAAGTTTCTCTCACCACAATTCGGTCCATGGTTGATGCATTTTACATTATTCAAATATTTATTCGGTTTCAAACTGCTTATGTTGCTCCTTCCTCTCGTGTTTTTGGTAGAGGAGAGCTTGTTATAGACCCTTCAAAGATTGCATCAAGGTACCTCCAGAAAGACTTCTGGCTTGATATTGTGGCAGCCCTCCCTCTTCCACAGGTGTTGATTTTGGCTGTAATTCCAAATCTAAGGGGGTCCCAAATGATTGCTTCAAGGCAGATTCTGCGCCTTGTTATCATTTTCCAGTACCTGTTGAGGTTATATCATATCTTCCCTCTTTCATCTGAGATAGTGAAGGCAAATGGGTTAATGATGGAAAAAGCATGGGCTGGGGCAGCATATAATCTGATGCTCTATATGCTGGCGAGTCATGTCTTAGGATCCTCCTGGTACCTCTTGGCAATTGAAAGGCAGGATGAGTGTTGGAAGAAAGCTTGTAATCTTGAGTTCCCACATTGCCGGTATCATTATCTCGAGTGTCAAAGCATAAGTGAGCCAGCCAGAGCAGTTTGGTTCAGATCAAGCAACCTGTCAGGTCTATGTGGTAAGGACAGTGATTTCTTCCAGTTTGGTATTTTCGCTGATGTTATGACTTTGGAAAGAGCGGACTCAAAGTTCTTAAGCAGATACTATTATTGTCTTTGGTGGGGACTACGGAATCTCAGCTCTCTGGGACAGAATCTCCTAACAAGCACCAATGTTGGAGAGATTATTTTTGCTGTGATTATTGCAATTTTAGGCTTGGTGCTTTTTGCACTGCTAATAGGCAATATGCAAACGTACCTGCAATCAACTACCATGCGACTTGAAGAATGGAGAATAAGAAGGACAGACACAGAACGATGGATGCATCACAGGCAGTTACCTCATTACCTGAAGCAAAACGTGCGACGCTATGAGCAATTCAGATGGGTTGCTACTCGGGGAGTTGACGAGGAAACCATTCTTCGAGACCTTCCTGTCGACATCAGACGTGACATCAAACGCCACTTGTGTCTCAACCTCGTTCGACAAGTACCACTGTTTGATCAGATGGATGAGAGAGTGCTAGACGCAATATGTGAAAGGCTGAAGCCTTCTCTGTGTACTCCAGGCACGCTCCCAGTTCGCGAAGGAGATCCTGTGAATGAAATGCTCTTCATCGTTCGAGGACGCCTAGATTCTTGTACCACCAATGGTGGCCGATCCGGGTTCTTCAACTGCTGCAGAATCGGGCCAGGTGATTTCTGTGGCGAGGAGCTATTGCCATGGGCTTTGGACCCACGACCTAGTGTGGTCCTTCCATCCTCAACTCGCACAGTAAAAGCCCTGACCGCAGTGGAAGCATTCGCCCTCATAGCGGAAGACTTGAAATTCGTGGCAGCTCAATTCAGGAGATTACACAGCAAGCAACTGAGGCACACGTTTAGGTCTCACTCGCACCAGTGGAGGGCATGGGCTGCATGCTTCATACAAGCGGCTTGGTTTAGATACAAGAGAAGGAAAGAGGCGAGTGAGCTGAATAAGAAGGAGTGTGGGTTGAAGGTGGCTTACAAAACTGCGGCGGAACATTTCTCTGCGCCTCTGCACTTGCAGAGCCGAATTGGTTCAGGTGTTACCATGCATAACGCGGCCAATTTGGGAGGCAGCCCGAGGAAAGGTGGAAGCTTGCGATATGGTTCTGAACTTGACATTCTTGGTTCCTTGAGGAAGCCCCTTGAACCTGACTTCAGTGTTGAAGATAGATGA 2334 0.458 MIFIFVSNSAWRSAVYVLVVTLCSYVQGSLFRFTEDGNALSLTSTLHQHALPSTKYDPPVWSEIGHCGAIGEIQFLVAMSSGRSRSVRFSDDPERDILTTSTGSPMSTPAYKMNAKSMLLEGKKLSRVFSEDYDASKRKIFDPRGLSLNRWNKMFLVACLISLFVDPFFFYLSEAKKDKCIAMSASLEVSLTTIRSMVDAFYIIQIFIRFQTAYVAPSSRVFGRGELVIDPSKIASRYLQKDFWLDIVAALPLPQVLILAVIPNLRGSQMIASRQILRLVIIFQYLLRLYHIFPLSSEIVKANGLMMEKAWAGAAYNLMLYMLASHVLGSSWYLLAIERQDECWKKACNLEFPHCRYHYLECQSISEPARAVWFRSSNLSGLCGKDSDFFQFGIFADVMTLERADSKFLSRYYYCLWWGLRNLSSLGQNLLTSTNVGEIIFAVIIAILGLVLFALLIGNMQTYLQSTTMRLEEWRIRRTDTERWMHHRQLPHYLKQNVRRYEQFRWVATRGVDEETILRDLPVDIRRDIKRHLCLNLVRQVPLFDQMDERVLDAICERLKPSLCTPGTLPVREGDPVNEMLFIVRGRLDSCTTNGGRSGFFNCCRIGPGDFCGEELLPWALDPRPSVVLPSSTRTVKALTAVEAFALIAEDLKFVAAQFRRLHSKQLRHTFRSHSHQWRAWAACFIQAAWFRYKRRKEASELNKKECGLKVAYKTAAEHFSAPLHLQSRIGSGVTMHNAANLGGSPRKGGSLRYGSELDILGSLRKPLEPDFSVEDR 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2866 777 SUPERFAMILY Voltage-gated potassium channels 144 465 - -
Dere01g2866 777 Gene3D - 153 467 - -
Dere01g2866 777 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 132 718 - -
Dere01g2866 777 FunFam Cyclic nucleotide-gated ion channel 1 541 659 - -
Dere01g2866 777 SUPERFAMILY cAMP-binding domain-like 473 665 IPR018490 -
Dere01g2866 777 Gene3D Helix hairpin bin 470 534 - -
Dere01g2866 777 Gene3D Jelly Rolls 541 661 IPR014710 -
Dere01g2866 777 SMART cnmp_10 543 674 IPR000595 -
Dere01g2866 777 ProSiteProfiles cAMP/cGMP binding motif profile. 543 628 IPR000595 -
Dere01g2866 777 PRINTS EAG/ELK/ERG potassium channel family signature 506 513 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere01g2866 777 PRINTS EAG/ELK/ERG potassium channel family signature 412 429 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere01g2866 777 PRINTS EAG/ELK/ERG potassium channel family signature 438 449 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere01g2866 777 PRINTS EAG/ELK/ERG potassium channel family signature 323 333 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere01g2866 777 PRINTS EAG/ELK/ERG potassium channel family signature 456 465 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere01g2866 777 PRINTS EAG/ELK/ERG potassium channel family signature 206 215 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere01g2866 777 Pfam Ion transport protein 151 470 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dere01g2866 777 CDD CAP_ED 543 672 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2866 Dere-ChrDere01 43453151 43457169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2866 113 775 Ion Channels AT2G28260 64.555 0.0 886