Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2865 ATGTCCTCCTCTGCGGCTTCCTTAGCCCTTCCCACTCTATATTCCAAACCCCAATCACTCTTCTCTTCCAGACAGGCTTTGTGCTCTCCCCATCCTATCACTTCCGTTTCTCTCGGACTCAATTCGAGGTCCATCTCTATCTCTGCCTCTTTCCTCCACCTCGACAGAACTTGTCCGGGTATTTCATCTCGTTTGGTCCCGAATGTCGCCCTTTCCTCCGAGTTCGACCAAGAAGAGGAGACTGTGAGTGAAGGAGACGAGCCCAGCTTCTCCCCTGACCTCAAACTCTTCGTGGGTAATCTTCCCTTCAGCATCGACAGTGCCCAACTCGCTGAATTGTTCGAAAGCGCTGGAAACGTAGAGATGGTTGAGGTAATTTATGATAAAATGACTGGAAGAAGCAGGGGATTTGGTTTTGTGACCATGTCTTCCGCTGAGGAAGTTGAAGCAGCTACTCAACAATTCAATGGCTATGAATTAGAAGGAAGGACATTGAGAGTAAATTCTGGACCTCCTCCCCCTCGCAGGGAGAATTCCCCTTTTAGAGGTGCCAGAGGCGGTTCTGCTTCAGGGGGAGGAAACCGAGTTCATGTAGGTAATCTTGCATGGGGTGTTGATAACGTGGCACTTGAGACATTGTTTGGTGAGCTTGGTAATGTTTTGGAAGCAAGGGTAATCTATGACAGAGAAAGTGGAAGATCAAGAGGATTTGGATTTGTAACTTACAGTAGCGCTGAAGAGGTTAACAGTGCCATTGAGTCCTTAAATGGGGCGGACTTGAGTGGCAGACCCATCCGAGTCTCATTAGCAGATGCTAAGCCAAGGCGTCAATTTTGA 837 0.4839 MSSSAASLALPTLYSKPQSLFSSRQALCSPHPITSVSLGLNSRSISISASFLHLDRTCPGISSRLVPNVALSSEFDQEEETVSEGDEPSFSPDLKLFVGNLPFSIDSAQLAELFESAGNVEMVEVIYDKMTGRSRGFGFVTMSSAEEVEAATQQFNGYELEGRTLRVNSGPPPPRRENSPFRGARGGSASGGGNRVHVGNLAWGVDNVALETLFGELGNVLEARVIYDRESGRSRGFGFVTYSSAEEVNSAIESLNGADLSGRPIRVSLADAKPRRQF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2865 278 SMART rrm1_1 195 268 IPR000504 GO:0003723
Dere01g2865 278 SMART rrm1_1 95 168 IPR000504 GO:0003723
Dere01g2865 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Dere01g2865 278 CDD RRM2_NsCP33_like 195 270 - -
Dere01g2865 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
Dere01g2865 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 266 IPR000504 GO:0003723
Dere01g2865 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Dere01g2865 278 MobiDBLite consensus disorder prediction 164 192 - -
Dere01g2865 278 SUPERFAMILY RNA-binding domain, RBD 88 194 IPR035979 GO:0003676
Dere01g2865 278 SUPERFAMILY RNA-binding domain, RBD 193 277 IPR035979 GO:0003676
Dere01g2865 278 FunFam Ribonucleoprotein A, chloroplastic 71 195 - -
Dere01g2865 278 Gene3D - 69 191 IPR012677 -
Dere01g2865 278 Gene3D - 192 278 IPR012677 -
Dere01g2865 278 PANTHER OS02G0815200 PROTEIN 34 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2865 Dere-ChrDere01 43440689 43442633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2865 96 277 Eukaryotic Initiation Factors Gene Family AT4G34110 34.426 3.37e-21 91.3