Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2864 ATGTCCTCCTCTACGGCTTCCTTAGCCCTTCCCACTCTAACCTCCAAGCCCCAATCACTCTTCTGTTCCAGACAAGCTTTGTGCTCTCCCCATCGCATCACTTCCGTTTCCCTCGGACTCAATTCGAAGCCCATCTCTATCTCTGCCTCTTTCCTCCACTTCGACAGGGCTTGTCCGAGTATTTTATCTAATTTCGTCCCGAATGTCGCCCTTTCCTCCATGTTCGACCAAGAAGAGGAGACTATGAGTGAAGGAGACGAGCCCAACTTCTCCCCCGACCTCAAAATCTTCGTGGGTAATCTTCCCTTCAGCACCGACAGTGCCCAACTCGCTGAATTGTTCGAAAGCGCTGGGAATGTAGAGATGGTTGAGGTAATTTACGATAAATCGACCGGAAGAAGCAGGGGATTTGGTTTTGTTACCATGTCTTCCGCTGAAGAAGTAGAGGCAGCTACTCAACAATTCAATGGCTATGAATTAGAGGGAAGGGCATTGCGAGTAAATTCTGGACCTCCTCCTCCTCGCAAGGAGAATTCCCCTTTTAGAGGTGCCAGAGGCGGTTCTGCTTCAGGGGGAGGAAACCGAGTTCATGTGGGTAATCTTGCATGGGGTGTTGATAATGTGGCACTTGAGACATTGTTTGGTGAGCTAGGAAATGTTTTGGAAGCAAGGGTAATCTATGACAGAGAAAGTGGAAGATCAAGAGGATTTGGATTTGTGACTTACGGTAGCGCTGAAGAGGTTAACAGTGCTATTGAGTCCTTAGATGGAGCGGACTTGAGTGGCAGGCCCATTCGAGTCTCATTAGCAGATGCTAAGCCAAGGCAGGACTTTCAGGTAGTGGGGAATTAG 852 0.4883 MSSSTASLALPTLTSKPQSLFCSRQALCSPHRITSVSLGLNSKPISISASFLHFDRACPSILSNFVPNVALSSMFDQEEETMSEGDEPNFSPDLKIFVGNLPFSTDSAQLAELFESAGNVEMVEVIYDKSTGRSRGFGFVTMSSAEEVEAATQQFNGYELEGRALRVNSGPPPPRKENSPFRGARGGSASGGGNRVHVGNLAWGVDNVALETLFGELGNVLEARVIYDRESGRSRGFGFVTYGSAEEVNSAIESLDGADLSGRPIRVSLADAKPRQDFQVVGN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2864 283 PANTHER OS02G0815200 PROTEIN 42 272 - -
Dere01g2864 283 SUPERFAMILY RNA-binding domain, RBD 193 275 IPR035979 GO:0003676
Dere01g2864 283 Gene3D - 192 280 IPR012677 -
Dere01g2864 283 Gene3D - 70 191 IPR012677 -
Dere01g2864 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Dere01g2864 283 SUPERFAMILY RNA-binding domain, RBD 88 195 IPR035979 GO:0003676
Dere01g2864 283 CDD RRM2_NsCP33_like 195 270 - -
Dere01g2864 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
Dere01g2864 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 266 IPR000504 GO:0003723
Dere01g2864 283 MobiDBLite consensus disorder prediction 164 192 - -
Dere01g2864 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Dere01g2864 283 SMART rrm1_1 95 168 IPR000504 GO:0003723
Dere01g2864 283 SMART rrm1_1 195 268 IPR000504 GO:0003723
Dere01g2864 283 FunFam Ribonucleoprotein A, chloroplastic 71 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2864 Dere-ChrDere01 43433550 43435622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2864 186 274 Eukaryotic Initiation Factors Gene Family AT4G34110 34.444 1.07e-09 57.0