Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2860 ATGGCATCGAATGGTCACCACCAAAATGGCACCTTCTGCTTGAGCAATGGTACAGCTGATCCACTGAACTGGGGCGTGGCAGCTGAGTCACTCAAGGGCAGCCATTTGGAGGAGGTGAAGCGCATGGTGGCCGAGTACCGGAAACCGGTAGTCCGGCTCGGCGGCGAGACGCTGACCATCTCTCAGGTGGCTGCCATTGCCGCCCACGACCAAGGCGTGAAGGTGGAGCTGTCGGAGTCAGCCAGGGCTGGCGTCAAGGCCAGCAGTGACTGGGTAATGGACAGCATGAACAAGGGAACCGATAGCTACGGTGTCACCACCGGATTCGGTGCTACCTCTCACAGGCGAACAAAACAAGGCGCTGCTTTGCAGAAAGAGCTCATCAGATTCTTGAACGCCGGAATATTTGGCAATGGCACAGAGTCATACCAAACCCTGCCACACTCAGCCACTAGAGCAGCCATGCTCGTGAGAATAAACACTCTTCTCCAGGGATACTCGGGCATCCGATTTGAAATACTAGAAGCCATCACCAAGCTCCTCAACCACAACATCACCCCATGCTTGCCCCTCCGCGGTACCATCACAGCTTCCGGCGATCTCGTCCCTCTTTCTTACATAGCCGGTTTACTTACCGGCAGGCCCAACTCCAAAGCCGTTGGTCCCAACGGAGAAGCCCTTAATCCCAAGGAAGCTTTTCAATTGGCAGGCATCGAGTCTGACTTCTTCGAATTGCAGCCCAAGGAAGGCCTTGCTCTTGTAAATGGCACTGCCGTTGGTTCCGGCTTGGCTTCTATGGTTCTCTTTGAGGCTAACATTCTAGCCGTGCTCTCTGAAGTTCTTTCCGCTATTTTCGCTGAAGTGATGCAGGGGAAGCCTGAATTTACAGACCATTTGACGCATAAATTGAAGCACCATCCTGGCCAGATTGAGGCTGCTGCTATCATGGAACACATTTTGGATGGAAGCTCCTATGTTAAAGCAGCCAAGAAGTTGCACGAGATGGATCCCCTGCAGAAGCCTAAACAAGATCGTTATGCTCTTCGAACTTCACCCCAATGGCTTGGCCCTCTAGTCGAAGTTATCAGATTCTCCACCAAATCAATCGAGAGGGAGATCAACTCTGTGAACGATAACCCCTTGATTGACGTTTCAAGGAACAAGGCCCTGCATGGTGGTAATTTCCAGGGAACCCCAATTGGAGTCTCCATGGACAATACGCGTTTGGCTCTTGCCTCCATTGGGAAGCTCATGTTTGCTCAATTCTCTGAGCTCGTCAATGACTTTTACAACAATGGTTTGCCTTCCAATTTGTCTGCTAGCAGAAACCCTAGCTTGGATTATGGCTTCAAGGGGGCTGAAATCGCCATGGCTTCTTACTGCTCGGAACTTCAATATCTTGCCAACCCTGTAACAACCCACGTCCAAAGTGCCGAGCAGCACAACCAAGATGTGAACTCTTTGGGTTTGATTTCGTCCAGGAAAACAAACGAAGCTATCGAGATCTTAAAGCTCATGTCTTCCACTTTTTTGGTTGCACTCTGCCAAGCAATCGACTTGAGGCATTTAGAAGAGAATTTGAAGAACACTGTCAAGAACACCGTTAGCCTAGTTGCCAAGAGAACTCTGACCACAGGTATGAATGGAGAACTCCACCCTTCCAGGTTTTGCGAGAAGGATTTATTGAAAGTGGTGGACAGGGAGTATGTGTTCGCCTACGTTGATGATCCCTGCAGTGCTACTTACCCGTTGATGCAGAAACTAAGGCAGGTACTCGTGGACCATGCTTTGGCCGATGCCGAAAACGAGAAAAATCTGAGCACATCTATCTTCCAGAAGATTGGAACTTTTGAGCAGGAGTTGAAGAGTGTGTTGCCAAAGGAGGTCGAGAGTGCAAGAGAAGCATATGAGAACGGCAATTCTGCAATTCCAAACAGGATTAAGGAATGCAGGTCATACCCTCTGTACAAGTTTGTGAGAGAGGAGTTGGGGACTGAATTGCTAACCGGAGAGAGGGTGATTTCGCCAGGCGAGGAGTGTGACAAGGTGTTCACAGCAATGTGTCAGGGCAAGATTATTGATCCTCTTCTCGAATGCCTTGGGGAGTGGAACGGTGCTCCTCTTCCTATCTGCTAA 2136 0.5005 MASNGHHQNGTFCLSNGTADPLNWGVAAESLKGSHLEEVKRMVAEYRKPVVRLGGETLTISQVAAIAAHDQGVKVELSESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGIFGNGTESYQTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEALNPKEAFQLAGIESDFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLVEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSLVAKRTLTTGMNGELHPSRFCEKDLLKVVDREYVFAYVDDPCSATYPLMQKLRQVLVDHALADAENEKNLSTSIFQKIGTFEQELKSVLPKEVESAREAYENGNSAIPNRIKECRSYPLYKFVREELGTELLTGERVISPGEECDKVFTAMCQGKIIDPLLECLGEWNGAPLPIC 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2860 711 SUPERFAMILY L-aspartase-like 20 711 IPR008948 GO:0003824
Dere01g2860 711 FunFam Phenylalanine ammonia-lyase 258 564 - -
Dere01g2860 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 193 209 IPR022313 GO:0016841
Dere01g2860 711 CDD PAL-HAL 56 521 IPR001106 -
Dere01g2860 711 Pfam Aromatic amino acid lyase 58 533 IPR001106 -
Dere01g2860 711 Gene3D - 13 257 IPR024083 -
Dere01g2860 711 NCBIfam phenylalanine ammonia-lyase 20 700 IPR005922 GO:0005737|GO:0006559|GO:0016841
Dere01g2860 711 Gene3D Fumarase/aspartase (Central domain) 258 706 - -
Dere01g2860 711 PANTHER HISTIDINE AMMONIA-LYASE 10 711 IPR001106 -
Dere01g2860 711 FunFam Phenylalanine ammonia-lyase 524 645 - -
Dere01g2860 711 FunFam Phenylalanine ammonia-lyase 13 257 - -
Dere01g2860 711 Gene3D - 524 645 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2860 Dere-ChrDere01 43388030 43390991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2860 20 711 Monolignol Biosynthesis Gene Families AT2G37040 85.549 0.0 1259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2860 01 43388030 43390991 Dere01g2860 01 43388030 43390991 ECH