Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2854 ATGACTGTTGCGATGCTAGGGCGAGAGGCAAAGCACTGTGAGGCGAAGGCAAGAGCAGGGTACCGTGAGGCGAAGGCAAAGGCGAGACCGCGAGACGAGAGCAGTGGCTGGCAAAGCCAAAGTCGAGCTGTTGAGGCGAGGACGAGGGAAGGGATTACAGCTCTTTCTAACGTGAATGACGAAACATTTGGGTCCCTTGGCTACGCTTATACTGTCATTGCAGTCTCTCTATTGTACAAGATTGCAGCTCTTAGAAAAGAAGAACAGGGAGGAGATTCGGGAACCATGAAGTATAGTAGTCAACGTCGGGACGTCAACATGAAGAATGAAGTATGCCCGACGACGTCACGACTCACGAGTGTCGTTAACTGTTGTGACATTAAATTGAAGCCGCATGGAAAGAGGAGTAAATTGATGTGCAATGAAATTCTAGGATGCAAAAGAGAACATGACATGGATCCAGAAGAATATTTGCAGAAGTGTTCGAATGTGAAATGCCCAAGGGTTCAGGTGGAAGGATCATTTGGTCCTGCTATTCAAGATGAAGTAATGGAAGTTGAACATTTACTTGCAGAACCTAGAAACAATCATGTTTCAGTGGATGGCATCTTGTATTTTCATGAGGAGAATCTAGGGAAATGCTGTGGCGTTGAAAATCTTTCCTGTGGATTCGAATTTGGTCCAAGAACAAGTACCGGTGGATCAGATTCTCAAACAACTTTGAATGGAAGAGACAATTTGAAACTTGAGGTACCTGATGGATTGCTGGATGATGTTGAAATTGATTATCTTAATGCAACAGATGGATTTTCTGGGGCATGCGAAGATTATCTTTTGGATTTCGAATTTGCTGACAAAGCTGTGGGTCTTTGTGGTGAATCACTATTACAAAGTTCAAGCTCTGAGAGTCATTCTCCCAGATTAAGTGGAAGTAGCAATGGTGTTGGTGGGGTATCTGAATCATCGAAAGTGGCCATTGAACAATCTGAATACAAAAATGATTTTCTAGATAATAGAGTAACCCATGACTTACATGGTGCCTTCAGGAACAATCCCTGTCAAGCATCAAATGGAGATGGCATTTGCAATTCACTTGATATACAGCATCTAAATGAGTTGGATAATGATTCCCCTTTAGCAGATAGTATATTGTCTAGTGAGAAGGAAAAGGGTTCTGTAGAAGAATGTCAAACTGCTGCACTTAGAGAGAAGAGATTCCGCAAGCCTACTCTGAGGTATATTGAAGAATTTTCAAATTTACAGTCAAAAGAAAAGGTTTTGATTACTGCGACCAAAAATAAACACCCAGATCTGGCATCCCATCATGAACTTAATCATATAAGGCTTAGAGCATTGAGAAATATTCCAGGCAAGAATTCTGATAGTGGAACTAGAGATGAGGCACTTCCAGAGTTGCGTAAGGAATGTCCGAGGATTGAGGAACTTGAGTTTGATGAAGAGTCTTTTCTGTCCGAGTCTGATGATGAACGGTTGACACCAAAAAAAACCAGAAAAACTGATCGGAGGAAGCATCAGAGATTGTGGACTTTATCAGAAGTGATCAAATTGGTTGATGGCATTTCTGAATATGGAGTTGGTCGATGGACTGATATAAAGAGGCTTCTGTTTTCTTCCTCTGGTTACCGTACACCTATAGATCTCAGGGACAAGTGGCGGAATCTTTTAAGAGCGAGTTCAGCACAGAAATTTAACAAAAAGGAGACTGAACAAAAGCATGACCATGCCTTGCGTTCCTTACCAATTACTGTTCTTCGCCGCATCCGTGAACTGGCTAAAATTCACCCATACCCTAGAGAACGATACTCAAGGGAATCATCTGTTGCCCAAGTTGGCTCCTCTTCCCGTCTAACTCAGACTAAAGGTAGTCCTAGCAAAAGAAATGTACGTAGGAAGAAGTGTACTTGA 1926 0.4232 MTVAMLGREAKHCEAKARAGYREAKAKARPRDESSGWQSQSRAVEARTREGITALSNVNDETFGSLGYAYTVIAVSLLYKIAALRKEEQGGDSGTMKYSSQRRDVNMKNEVCPTTSRLTSVVNCCDIKLKPHGKRSKLMCNEILGCKREHDMDPEEYLQKCSNVKCPRVQVEGSFGPAIQDEVMEVEHLLAEPRNNHVSVDGILYFHEENLGKCCGVENLSCGFEFGPRTSTGGSDSQTTLNGRDNLKLEVPDGLLDDVEIDYLNATDGFSGACEDYLLDFEFADKAVGLCGESLLQSSSSESHSPRLSGSSNGVGGVSESSKVAIEQSEYKNDFLDNRVTHDLHGAFRNNPCQASNGDGICNSLDIQHLNELDNDSPLADSILSSEKEKGSVEECQTAALREKRFRKPTLRYIEEFSNLQSKEKVLITATKNKHPDLASHHELNHIRLRALRNIPGKNSDSGTRDEALPELRKECPRIEELEFDEESFLSESDDERLTPKKTRKTDRRKHQRLWTLSEVIKLVDGISEYGVGRWTDIKRLLFSSSGYRTPIDLRDKWRNLLRASSAQKFNKKETEQKHDHALRSLPITVLRRIRELAKIHPYPRERYSRESSVAQVGSSSRLTQTKGSPSKRNVRRKKCT 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2854 641 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 507 566 IPR017930 -
Dere01g2854 641 Gene3D - 501 612 - -
Dere01g2854 641 SUPERFAMILY Homeodomain-like 509 574 IPR009057 -
Dere01g2854 641 ProSiteProfiles Myb-like domain profile. 515 562 IPR001005 -
Dere01g2854 641 MobiDBLite consensus disorder prediction 19 43 - -
Dere01g2854 641 Pfam Myb-like DNA-binding domain 515 562 IPR001005 -
Dere01g2854 641 SMART sant 511 564 IPR001005 -
Dere01g2854 641 CDD SANT_TRF 515 563 - -
Dere01g2854 641 MobiDBLite consensus disorder prediction 486 507 - -
Dere01g2854 641 MobiDBLite consensus disorder prediction 298 322 - -
Dere01g2854 641 MobiDBLite consensus disorder prediction 612 630 - -
Dere01g2854 641 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 153 628 - -
Dere01g2854 641 Pfam ABC-2 type transporter 53 86 IPR043926 GO:0140359
Dere01g2854 641 MobiDBLite consensus disorder prediction 608 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2854 Dere-ChrDere01 43348413 43355323 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere01g2854 Myb_DNA-binding 1.4e-07 CL0123