Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2840 ATGATTCGGTCGTTCGTTGGGAGAATACAGAAGGGTCTGTCGCTCTTTGTGGGCAGAAGGAGACTGGAAGCTGCAAACTTGGCGGTACCAGATGATGTTATGGATGGCCAATTTGCGGTTGTTGCAACCGAGGGAGAAGAAGCGGAGAGGTTTATCCTTGAACTCGACTACTTGACTGACCCTGCATTCTTGTTGCTGCTAGACCGGGCTCAGGAAGTGTATGGTTTTGGACAGCAAGGAGCTCTTGCAGTCCCATGCCGGCCTCAAGAATTGCAGAAGATTCAAGAAGATCACAGGCGAATCTCACTATCTTCATAG 318 0.4969 MIRSFVGRIQKGLSLFVGRRRLEAANLAVPDDVMDGQFAVVATEGEEAERFILELDYLTDPAFLLLLDRAQEVYGFGQQGALAVPCRPQELQKIQEDHRRISLSS 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2840 105 Pfam Auxin responsive protein 19 94 IPR003676 GO:0009733
Dere01g2840 105 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 23 93 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2840 Dere-ChrDere01 43242528 43242845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2840 30 86 Calmodulin-binding Proteins AT5G20810 45.614 1.26e-10 53.9