Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2838 ATGCTGTATGTGAACGCGTTGAACAGTAACATATGCCGACACCGTCAAGAATACAATGAGTTGTTGGATTACAGGTCAAAATGCACGGATGTCCCCTTCGCTAATATGCGGTCTTCAATGTCAGCAGCATGCACTGGACATTTTTTTCTAAGCACTAGTGACAGCCAGTATACAATGAAGATGCACAAGTACTCAGTAATCATCACCAAGGTACTAAAGGGTCTCTCATTGGCAGCAATAATTAGAAGTCGAAGATGTCATTCAGGAGAGTTGAATGAAGAAATTGAAGCAGCAAGGAGGGTGCCAGAAGGACATTTTGCGGTTGTTGCAATGAAGGGGGAAGAAGCGAAGAGGTTTGTAGTGAAATTGGATTGCTTACGTGATCCAGCTTTTCTGACACTGCTGGAGAAGGCGAGGGAAGAGTATGGCTTTGGACAGAAGGGTGCTCTTGCTCTCCCTTGCAAGCCTCAAGAACTCCAGAACATTATAGAGAATCGCACGCGCTGCACGTGA 513 0.4542 MLYVNALNSNICRHRQEYNELLDYRSKCTDVPFANMRSSMSAACTGHFFLSTSDSQYTMKMHKYSVIITKVLKGLSLAAIIRSRRCHSGELNEEIEAARRVPEGHFAVVAMKGEEAKRFVVKLDCLRDPAFLTLLEKAREEYGFGQKGALALPCKPQELQNIIENRTRCT 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2838 170 Pfam Auxin responsive protein 84 163 IPR003676 GO:0009733
Dere01g2838 170 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 88 161 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2838 Dere-ChrDere01 43220119 43221095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2838 84 169 Calmodulin-binding Proteins AT4G34750 40.698 4.82e-13 61.6