Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2837 ATGAATCGCAAGTGTGGTGATCCGTCCTTCAAGGTCGGAGAGAGAGGGCTGCGGCCTTCAGGAGGGCAAAAGCAGAGGACAGCAATAGCAAGGGCAATGCTGAAAAACCCAGCAATTCTTCTGCTGGATGAAGCAACAAGTGCATTAGACTCTGAGTCAGAAAAGCTGGTTCAAGAAGCCCTTGACCGGTTCATGATTGGTAGAACAACTCTTGTAATCGCTCATCGCCTCTCCACTATTCGCAAAGCTAACCTTGTAGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTCGCTAAAGGTGAAAATGGAGTCTATGGCAAGCTTATCCGGATGCAGGAAGCAGCACATGAAACTGCTATGAGCAATGCCAGAAAGAGTAGTGCAAGTGCTAGAAACTCTGTAAGCTCACTGATAATTGCCCGTAATTCTTCTTATGGCCGCTCGCCATACTCACGCAGGCTTTCTGACTTCTCTACTTCTGACTTTAGTCTGTCCCTTGATGCACCACATCCAAATTACAGGCTTGAAAAGCTTGCCTTCAAAGAGCAAGCCAGTTCCTTCTGGCGTCTTGCAAAAATGAACTCTCCCGAATGGTTATATGCTTTAATTGGTTCCATAGGCTCTGTTGTTTGTGGATCCCTTAGTGCATTCTTTGCTTATGTCCTTAGTGCAGTCCTCAGTGTCTATTACAATCCAAACCACAGATTTGTGATCCGAGAAATTGAGAAGTATTGCTACTTGTTGATTGGCCTTTCATCAGCCGCACTTCTCTTCAATACACTGCAGCATTTCTTCTGGGATATCGTGGGAGAAAATCTTACAAAGCGAGTGAGGGAGAAGATGCTGACTGCCATGCTCAAGAACGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATCGCCGCTAGGCTTGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGACCGGATTTCAGTAATTGTCCAGAACACTGCCCTCATGCTAGTTGCATGTACTGCAGGGTTTGTTTTGCAGTGGCGCCTTGCGCTTGTCCTCGTAGCTGTCTTCCATGTTGTTGTTGCGGCCACTGTTTTGCAGGCATACCTGGAAGCTGCTCATGCCAAGGCCACACAACTTGCCGGAGAAGCTATCTCAAATGTTAGAACTGTTGCTGCCTTTAACTCAGAAACAAAAATTGTTGGTCTTTTCACCTCCAACCTAGAGACTCTGCTACGACGTTGCTTTTGGAAGGGACAGATTTCTGGAAGTGGATTTGGGATAGCTCAGTTTGCACTTTATGCCTCCTATGCACTTGGTCTGTGGTATGCCTCTTGGCTTGTGAAGCACGGAATCTCTGATTTCTCAAAAACAATAAGAGTATTTATGGTCCTCATGGTTTCTACGAATGGTGTTGCTGAAACTTTAACCCTGGCCCCAGACTTTATCAAGGGAGGTCGAGCCATGAAGTCAGTCTTTGATCTTCTTGACCGTAGAACTGAAATTGAGCCAGATGACCTTGATGCTATTCCAGCTCCTGATCGTCTTCGTGGTGAAGTTGAACTTAAGCACGTTGACTTCTCATATCCAACTCGCCCAGATATGCCAGTATTTCGCGACCTTAGTCTTCATGCTAGAGCTGGTAAAACTCTTGCCCTTGTTGGACCTAGTGGTTGTGGTAAGAGCTCAATCATTGCGCTTGTACAGTGGTTCTATGAACCATCGTCCGGGCGGGTCATGATCGATGGAAAGGACATTAGAAAATACAATCTCAAGTCCCTCAGGAGGCACATTGCTATGGTACCCCAAGAGCCCTGCCTGTTTGCTGCTACTATATACGAAAACATCGCATATGGGCATGACTCGGCAACCGAAGCTCAGATTATAGAAGCAGCAACTTTTGCCAATGCCCACAAGTTCATATTGGCTTTGCCTGATGGATACAAGACCTTTGTAGGGGAGAGAGGAGTCCAACTATCTGGAGGGCAAAAGCAGAGAATAGCCATTGCTCGGGCTTTTGTGAGGAAGGCAGAGCTAATGCTTCTTGATGAGGCAACAAGTGCACTTGATGTCAAGTCTGATAGGTCTGTTCAGGAGGCTCTGGACCGTGCATGCTTCGGAAAAACAACTATTATAGTTGCACATAGGCTATCAACTATTAGGAATGCTAATCTCATTGCCGTAATTGATGATGGGAAAGTGGCAGAGCAAGGATCCCACTCACAGTTGTTGAAAAATTACCCAGATGGGATCTATGCACGAATGATTTAG 2283 0.4608 MNRKCGDPSFKVGERGLRPSGGQKQRTAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKANLVAVLQQGSVSEIGTHDELFAKGENGVYGKLIRMQEAAHETAMSNARKSSASARNSVSSLIIARNSSYGRSPYSRRLSDFSTSDFSLSLDAPHPNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHRFVIREIEKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLTAMLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFHVVVAATVLQAYLEAAHAKATQLAGEAISNVRTVAAFNSETKIVGLFTSNLETLLRRCFWKGQISGSGFGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSTNGVAETLTLAPDFIKGGRAMKSVFDLLDRRTEIEPDDLDAIPAPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLHARAGKTLALVGPSGCGKSSIIALVQWFYEPSSGRVMIDGKDIRKYNLKSLRRHIAMVPQEPCLFAATIYENIAYGHDSATEAQIIEAATFANAHKFILALPDGYKTFVGERGVQLSGGQKQRIAIARAFVRKAELMLLDEATSALDVKSDRSVQEALDRACFGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNYPDGIYARMI 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2837 760 Gene3D ABC transporter type 1, transmembrane domain 377 512 IPR036640 GO:0005524|GO:0016020
Dere01g2837 760 FunFam ABC transporter B family member 1 188 489 - -
Dere01g2837 760 FunFam ABC transporter B family member 1 515 760 - -
Dere01g2837 760 Gene3D ABC transporter type 1, transmembrane domain 135 374 IPR036640 GO:0005524|GO:0016020
Dere01g2837 760 Pfam ABC transporter 18 47 IPR003439 GO:0005524
Dere01g2837 760 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 524 760 IPR003439 GO:0005524
Dere01g2837 760 Pfam ABC transporter 543 691 IPR003439 GO:0005524
Dere01g2837 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 119 IPR027417 -
Dere01g2837 760 FunFam ABC transporter B family member 19 490 512 - -
Dere01g2837 760 Pfam ABC transporter transmembrane region 210 471 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g2837 760 ProSitePatterns ABC transporters family signature. 663 677 IPR017871 GO:0005524|GO:0016887
Dere01g2837 760 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 195 759 IPR039421 -
Dere01g2837 760 SMART AAA_5 551 743 IPR003593 GO:0016887
Dere01g2837 760 Gene3D - 11 134 IPR027417 -
Dere01g2837 760 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 209 488 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g2837 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 759 IPR027417 -
Dere01g2837 760 MobiDBLite consensus disorder prediction 1 24 - -
Dere01g2837 760 SUPERFAMILY ABC transporter transmembrane region 196 508 IPR036640 GO:0005524|GO:0016020
Dere01g2837 760 Gene3D - 513 759 IPR027417 -
Dere01g2837 760 CDD ABC_6TM_Pgp_ABCB1_D2_like 198 506 - -
Dere01g2837 760 CDD ABC_MTABC3_MDL1_MDL2 524 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2837 Dere-ChrDere01 43216438 43219937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2837 11 760 Calmodulin-binding Proteins AT2G36910 85.564 0.0 1321