Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2829 ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCGTGCCACCTGCTCCTATTTCCGACCCGACAGCGGAAAACAGAGACTCCAACGCTGAAGAAGCGACCAAAGGAGAGCGAAAGGACATGGAAAGCTCTGAACCCAAGAAAGATAGTGGACAGAAGCCTGAGACTGTTCCGGCTGTTGGATTCGGCCAGCTTTTCAGATTCGCCGATGGCTTAGATTACATTCTGATGGGAATTGGAACGGTGGGAGCTATTGTACACGGGTGTTCTTTGCCTCTGTTTCTTCGGTTCTTCGCCGATCTCGTAAATTCGTTTGGGTCCAATGCCAATGATGTGGACAAGATGACCCAGGAAGTCGTCAAGTACGCATTTTACTTCCTGGTGGTGGGTGCTGCTATATGGGCATCCTCGTGGGCAGAGATATCCTGCTGGATGTGGACTGGAGAGAGGCAGTCGACGAAAATGAGGATCAAGTACCTCGAAGCTGCCTTGAACCAGGACATTCAGTACTTTGATACCGAGGTTCGAACATCCGACGTTGTAATTGCCGTTAACACTGATGCTGTGATGGTCCAAGATGCCATTAGCGAGAAGCTGGGTAATTTCATTCACTACATGGCCACATTCGTTTCCGGATTTGTGGTGGGTTTCACGGCTGTTTGGCAATTAGCTCTAGTTACACTCGCCGTCGTCCCAATGATAGCTGTGATCGGAGGAATTCACACCGCCACGTTGGCCAAGCTCTCCGGCAAAAGCCAGGAAGCTCTCTCTCAAGCTGGCAACACTGTGGAACAGACGGTTGCTCAAATTCGAGTGGTATTGGCATTTGTGGGGGAAAGTCGGGCATTACAAGCGTACTCGTCGGCCTTGGAAGTAGCCCAGAAGGTCGGCTACAAAACTGGGCTCGCAAAGGGAATGGGATTGGGTGCAACTTACTTTGTCGTTTTCTGCTGTTATGCTCTTCTGTTATGGTATGGAGGTTACCTCGTTAGACACCACTACACCAATGGAGGACTTGCCATTGCCACGATGTTTGCTGTTATGATAGGTGGATTGGGTTTGGGTCAATCTGCCCCAAGCATGGCTGCATTTACAAAGGCCAGAGTTGCTGCTGGAAAAATTTTCCGCATAATCGATCACAAGCCAGGTGTAGACCGAAACAGTGAATCGGGTTTGGAATTAGAGTCAGTGACAGGACTAGTGGAGCTGAAAAATGTAGACTTTTCCTACCCATCAAGGCCAGAGGTTCGAATCCTCAATGATTTCTCACTGGTTGTGCCTGCTGGGAAGACCATAGCTTTGGTTGGAAGTAGCGGCTCTGGCAAGAGCACCGTCGTCTCCCTCATTGAGAGATTCTATGACCCAACTTCTGGACAAGTTCTGCTTGATGGACATGACATCAAATCGTTAAAGCTTAGATGGCTGAGGCAGCAAATAGGACTAGTAAGCCAAGAGCCAGCTTTATTTGCTACCACGATCAGAGAAAATATACTGTTGGGTCGGCCTGATGCAGACCAGGTTGAGATTGAAGAAGCTGCAAGGGTAGCTAATGCTCATTCATTCATTATCAAGCTTCCAGAAGGCTATGATACCCAGGTCGGAGAGAGAGGGCTGCAGCTTTCAGGAGGGCAAAAGCAGAGGATAGCAATAGCAAGGGCAATGCTGAAAAACCCAGCAATTCTTCTGTTGGATGAAGCAACAAGTGCATTAGACTCTGAGTCAGAAAAGCTGGTTCAAGAAGCCCTTGACCGGTTCATGATTGGTAGAACAACTCTTGTAATCGCCCATCGCCTCTCCACTATTCGCAAAGCTGACCTTGTAGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTCGCTAAAGGTGAAAATGGAGTCTATGCCAAGCTTATCCGGATGCAGGAGGCAGCACATGAAACTGCTATGAGCAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCTAGAAACTCTGTAAGCTCACCGATAATTGCTCGTAATTCTTCTTATGGCCGCTCGCCATACTCACGCAGGCTTTCTGACTTCTCTACTTCTGACTTTAGTCTGTCCCTTGATGCACCACATCCAAATTACAGGCTTGAAAAGCTTGCCTTCAAAGAGCAAGCCAGTTCCTTCTGGCGTCTTGCAAAAATGAACTCTCCCGAATGGTTATATGCTTTAATTGGTTCCATAGGCTCTGTTGTTTGTGGATCCCTTAGTGCATTCTTTGCTTATGTCCTTAGTGCAGTCCTCAGTGTCTATTACAATCCAAACCACAGATTTATGATCCGAGAAATTGAGAAGTATTGCTACTTGTTGATTGGCCTTTCATCAGCCGCACTTCTCTTCAATACACTGCAGCATTTCTTCTGGGATATCGTGGGAGAAAATCTTACAAAGCGAGTGAGGGAGAAGATGCTGACTGCCGTGCTCAAGAACGAAATGGCTTGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATCGCCGCTAGGCTTGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGACCGGATTTCAGTAATTGTCCAGAACACTGCCCTCATGCTAGTTGCATGTACTGCAGGGTTTGTTTTGCAGTGGCGCCTTGCGCTTGTCCTCGTAGCTGTCTTCCCTGTTGTTGTTGCGGCCACTGTTTTGCAGAAAATGTTCATGACCGGTTTCTCTGGAGACCTGGAAGCTGCTCATGCCAAGGCCACACAACTTGCCGGAGAAGCTATCTCAAATGTTAGAACTGTTGCTGCCTTTAACTCAGAAACAAAAATTGTTGGTCTTTTCACCTCCAACCTAGAGACTCCGCTACGACGTTGCTTTTGGAAGGGACAGATTTCTGGAAGTGGATTTGGGATAGCTCAGTTTGCACTTTATGCCTCCTATGCACTTGGTCTGTGGTATGCCTCTTGGCTTGTGAAGCACGGAATCTCTGACTTCTCAAAAACAATAAGAGTATTTATGGTCCTCATGGTTTCTGCGAATGGTGCTGCTGAAACTTTAACCCTGGCTCCGGACTTTATCAAGGGAGGTCGAGCCATGAAGTCAGTCTTTGATCTTCTTGACCGTAGAACTGAAATTGAGCCAGATGATCCTGATGCTATTCCAGCTCCTGATCGTCTTCGTGGTGAAGTTGAACTTAAGCACGTTGACTTCTCATATCCAACTCGCCCAGATATGCCAGTATTTCGCGACCTCAGTCTTCGTGCTAGAGCTGGTAAAACTCTTGCCCTTGTTGGACCTAGTGGTTGTGGTAAGAGCTCAGTCATTGCGCTTGTACAGCGGTTCTATGAACCATCGTCGGGGCGGGTCATGATCGATGGAAAGGACATTAGAAAATACAATCTCAAGTCCCTCAGGAGGCACATTGCTGTGGTACCCCAAGAGCCCTGCCTGTTTGCTGCTACTATATACGAAAACATCGCATATGGGCATGACTCGGCAACGGAAGCTGAGATTATAGAAGCAGCAACTCTTGCCAATGCCCACAAGTTCATATCGGCTTTGCCTGATGGATACAAGACCTTTGTAGGGGAGAGAGGAGTCCAACTATCTGGAGGGCAAAAGCAGAGAATAGCCATTGCTCGGGCTTTTGTGAGGAAGGCAGAGCTAATGCTTCTTGATGAGGCAACAAGTGCACTTGATGCCGAGTCTGAGAGGTCTGTTCAGGAGGCTCTGGACCGTGCATGCTCTGGAAAAACAACTATTATAGTTGCACATAGGCTATCAACTATTAGGAATGCTAATCTCATTGCCGTGATTGATGATGGGAAAGTGGCAGAGCAAGGATCCCACTCACAGTTGTTGAAAAATTACCCAGATGGGATCTATGCACGAATGATTCAGTTACAAAGGTTTACACACAGTCAAGCAGTTGGCATGGCCTCAGGTTCAAGTTCTTCGGCGAGACCAAATGATGATGACAGAGAAAGCTAG 4005 0.4754 MSQDSEEIKTIEQWKWSEMQGLELVPPAPISDPTAENRDSNAEEATKGERKDMESSEPKKDSGQKPETVPAVGFGQLFRFADGLDYILMGIGTVGAIVHGCSLPLFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALNQDIQYFDTEVRTSDVVIAVNTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTATLAKLSGKSQEALSQAGNTVEQTVAQIRVVLAFVGESRALQAYSSALEVAQKVGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAGKIFRIIDHKPGVDRNSESGLELESVTGLVELKNVDFSYPSRPEVRILNDFSLVVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEAAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDAPHPNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHRFMIREIEKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAISNVRTVAAFNSETKIVGLFTSNLETPLRRCFWKGQISGSGFGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMKSVFDLLDRRTEIEPDDPDAIPAPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFAATIYENIAYGHDSATEAEIIEAATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAIARAFVRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNYPDGIYARMIQLQRFTHSQAVGMASGSSSSARPNDDDRES 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2829 1334 Pfam ABC transporter transmembrane region 90 362 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g2829 1334 Pfam ABC transporter transmembrane region 746 1015 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g2829 1334 Pfam ABC transporter 1087 1235 IPR003439 GO:0005524
Dere01g2829 1334 Gene3D - 403 653 IPR027417 -
Dere01g2829 1334 Gene3D - 1057 1308 IPR027417 -
Dere01g2829 1334 FunFam ABC transporter B family member 19 1034 1056 - -
Dere01g2829 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1060 1307 IPR027417 -
Dere01g2829 1334 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 91 378 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g2829 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 652 IPR027417 -
Dere01g2829 1334 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 413 649 IPR003439 GO:0005524
Dere01g2829 1334 CDD ABC_MTABC3_MDL1_MDL2 1068 1307 - -
Dere01g2829 1334 CDD ABC_6TM_Pgp_ABCB1_D1_like 89 386 - -
Dere01g2829 1334 SUPERFAMILY ABC transporter transmembrane region 77 397 IPR036640 GO:0005524|GO:0016020
Dere01g2829 1334 Gene3D ABC transporter type 1, transmembrane domain 724 1033 IPR036640 GO:0005524|GO:0016020
Dere01g2829 1334 PANTHER ABC TRANSPORTER B FAMILY 49 757 IPR039421 -
Dere01g2829 1334 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 745 1032 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g2829 1334 SMART AAA_5 440 626 IPR003593 GO:0016887
Dere01g2829 1334 SMART AAA_5 1095 1287 IPR003593 GO:0016887
Dere01g2829 1334 Gene3D ABC transporter type 1, transmembrane domain 1034 1312 IPR036640 GO:0005524|GO:0016020
Dere01g2829 1334 Gene3D ABC transporter type 1, transmembrane domain 76 666 IPR036640 GO:0005524|GO:0016020
Dere01g2829 1334 Pfam ABC transporter 431 580 IPR003439 GO:0005524
Dere01g2829 1334 CDD ABC_6TM_Pgp_ABCB1_D2_like 734 1050 - -
Dere01g2829 1334 MobiDBLite consensus disorder prediction 1315 1334 - -
Dere01g2829 1334 FunFam ABC transporter B family member 1 403 653 - -
Dere01g2829 1334 MobiDBLite consensus disorder prediction 22 68 - -
Dere01g2829 1334 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1068 1304 IPR003439 GO:0005524
Dere01g2829 1334 FunFam ABC transporter B family member 1 76 411 - -
Dere01g2829 1334 ProSitePatterns ABC transporters family signature. 552 566 IPR017871 GO:0005524|GO:0016887
Dere01g2829 1334 CDD ABC_MTABC3_MDL1_MDL2 413 652 - -
Dere01g2829 1334 FunFam ABC transporter B family member 1 1059 1308 - -
Dere01g2829 1334 MobiDBLite consensus disorder prediction 37 64 - -
Dere01g2829 1334 FunFam ABC transporter B family member 1 724 1033 - -
Dere01g2829 1334 SUPERFAMILY ABC transporter transmembrane region 732 1055 IPR036640 GO:0005524|GO:0016020
Dere01g2829 1334 ProSitePatterns ABC transporters family signature. 1207 1221 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2829 Dere-ChrDere01 43161553 43167226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2829 57 1329 Calmodulin-binding Proteins AT2G36910 88.462 0.0 2312