Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2828 ATGGGTAGAGCTCCTTGCTGCGACAAAGCCAATGTAAAGAAAGGACCATGGTCTCCTGAAGAAGATGCACAGCTAAAGGAGTATATAGAGAAACATGGGACTGGTGGAAATTGGATTGCTCTTCCACAAAAAGCTGGTCTGAAAAGATGCGGGAAAAGCTGTAGACTAAGATGGCTCAACTATCTCAGACCTAACATCAAACACGGTGAGTTCTCTGATGATGAAGAGAGGATCATCTGCAGCCTCTTTGCTAGTATCGGAAGCAGATGGTCAATAATAGCATCTCAGTTGCCGGGAAGGACTGATAACGATATCAAAAACTACTGGAACACCAAGCTTAAGAAAAAAATGATGGGCATGAATCCTTCAGCACATCATCAAGCTACCCTTTTATCGGCTCTACGAAATTCAACATCATCTTCTTCCTCATCCTCAGCATCTTCACCATTATCATTCACAGACAGCACCAACTCTTACTGGCACCCTGCTCAAGGGTCATTCACAGGCTCTGATCCGTCCATGTCGTACACGTCAACGAGTTTTTTGAGTGGCCATTCTTCTTGTGCTACTGCCAGCTCCTTTTATCAACCCCAAGAAAGGTTGATGGGTCCCATTCAGAATTACCAAGTTAAAGATGGAATCTTAATGTTTGGGGGTGAAGCAGCTAGCTGCAGCTCTTCTGACGGAAGCTGCAATAATAACCAGATGAGTCATATGAAAGAAGCAGACGTTGGATACGGAGGAGATCATGGAACTTTTGTCGAACAGATGATAGGTGTGCATAATAATTATAATTACCTGAACAGTAGGATGGAAATGGAAGAAAGCCAGAAGGTGATGGTGAATGATGGGGGTTACGTGGGTGGGTGGACAGAGAAACAAAGTGGATTGTGGGAAGAGAATCCACCATTAGAATATGGAATAGAAGAACTTCTATTAAGCACTAGTGGTTGCAACAACTTTTTGTTTGATGAAAACATGACACAGAAAAGAGCCGTGTACTACTACTGA 1011 0.4322 MGRAPCCDKANVKKGPWSPEEDAQLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDDEERIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGMNPSAHHQATLLSALRNSTSSSSSSSASSPLSFTDSTNSYWHPAQGSFTGSDPSMSYTSTSFLSGHSSCATASSFYQPQERLMGPIQNYQVKDGILMFGGEAASCSSSDGSCNNNQMSHMKEADVGYGGDHGTFVEQMIGVHNNYNYLNSRMEMEESQKVMVNDGGYVGGWTEKQSGLWEENPPLEYGIEELLLSTSGCNNFLFDENMTQKRAVYYY 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2828 336 Gene3D - 70 143 - -
Dere01g2828 336 FunFam Transcription factor RAX3 7 68 - -
Dere01g2828 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Dere01g2828 336 PANTHER OS09G0431300 PROTEIN 1 281 - -
Dere01g2828 336 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dere01g2828 336 Gene3D - 7 68 - -
Dere01g2828 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Dere01g2828 336 SMART sant 67 115 IPR001005 -
Dere01g2828 336 SMART sant 13 64 IPR001005 -
Dere01g2828 336 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dere01g2828 336 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Dere01g2828 336 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dere01g2828 336 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dere01g2828 336 FunFam Transcription factor MYB36 70 142 - -
Dere01g2828 336 CDD SANT 16 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2828 Dere-ChrDere01 43127521 43128875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2828 1 130 MYB Transcription Factor Family AT5G57620 80.000 1.05e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g2828 Myb_DNA-binding 1e-14 CL0123