Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2818 ATGCAAAGCATGGAAGGAGAAAGTTTGCATAAAGGGCCTTGGCTCCAAAAGGAAGATGAGCAACTCACCACCTTCATTACCTGTCTCGAAGAACGAATGTGGGATTCCCTTGCCAAAGTAGCTGGGCTCAGGAGAAGTGGTAAAAGTTGCAGGTTGAGGTGGAAGAACTATCTTCGTCTAAATCTGAAGCATGGCCCTTTTAGTGTTGAAGAAGAGCGAGTCATTCTTCAACTTCACCAGCAATGGGGTAACAAGTGGTCAAAGATTGCACGCAATAAGTTCCGATATGAACTTGAGAACCGTGACCAAGGTGACAACATTGAGAAAAGCATCAATGATAAGGTTTGCAAGGATTACGACCAAGTGAACCTTGAATGTCGAGAAAATGTCGATGGGACTAAGGATAGCTCCTTTCAGGCTTTTCCATCATCAGAATGGGAATTGATGAGTTCACCATATGACATTCGGATATTGGATTGGATAGCAGAGTTGCAAAAAGATCAGAATGAAATAGAATATGAACAGGACTGTTATAGCACCCAATCCAGTGAACTTATCCTACATGGTTCTCCAATGGCTATGATACATGGGTTTGTTCAGGTTCTCTCTGGGACATGA 618 0.4288 MQSMEGESLHKGPWLQKEDEQLTTFITCLEERMWDSLAKVAGLRRSGKSCRLRWKNYLRLNLKHGPFSVEEERVILQLHQQWGNKWSKIARNKFRYELENRDQGDNIEKSINDKVCKDYDQVNLECRENVDGTKDSSFQAFPSSEWELMSSPYDIRILDWIAELQKDQNEIEYEQDCYSTQSSELILHGSPMAMIHGFVQVLSGT 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2818 205 SMART sant 10 60 IPR001005 -
Dere01g2818 205 SMART sant 63 110 IPR001005 -
Dere01g2818 205 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Dere01g2818 205 Gene3D - 11 63 - -
Dere01g2818 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 62 IPR017930 -
Dere01g2818 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 92 IPR017930 -
Dere01g2818 205 Gene3D - 66 124 - -
Dere01g2818 205 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 91 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dere01g2818 205 SUPERFAMILY Homeodomain-like 12 89 IPR009057 -
Dere01g2818 205 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Dere01g2818 205 Pfam Myb-like DNA-binding domain 65 91 IPR001005 -
Dere01g2818 205 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2818 Dere-ChrDere01 43030429 43031458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2818 7 91 MYB Transcription Factor Family AT5G59780 55.294 4.41e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g2818 Myb_DNA-binding 3.1e-08 CL0123