Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2817 ATGCTCAAAACAACCTGCATTCTGCTAATCTCCCTTCTGGCGTCGTTCTTTCCACTTGGAAGAGCAATGCTGAACCTCACTCTTCCTGGTCAGCATCCCGACCCCGAATCTGTTGTTCAGGAAGTTCATAGGAAGGTGAATGCTTCAATTGCAAGGAGGCAAATGCTAGCAGAGTCGCAGATAGGAGAATCGTCGTGTTTAACGGGGAACCCAATCGATGATTGCTGGAAATGCGACCCAGATTGGCCCAACAACCGTCAGAGGTTAGCTGACTGCGCAATTGGGTTTGGGCAGTACGCCAAGGGAGGCAAGGGCGGCGAGTTCTACATCGTCACTGACTCCTCAGACGACGACGCCGTTAACCCAAAACCCGGCACCCTCAGATACGCAGTGATTCAGACGCAGCCTCTTTGGATTGTGTTTCCCAGTAACATGATGATTAAGCTGTCTCAGGAGCTCATCTTTAATAGCTACAAAACCCTCGATGGGCGAGGCGCTGATGTTCATATTGTGGGCGGTGGCTGCATTACTCTCCAGTATATAAGCAATGTCATCATTCACAACATTCACATCCACCATTGTCATCCCTCAGGGGAGGCTAATGTGCGGTCGAGTCCAGACCATTACGGGTGGAGAACAGAATCGGACGGTGATGCGATATCCATATTCGGGTCGAAAGACTTATGGATCGACCACTGCACGCTGTCGCGGTGCAAAGACGGGTTGATAGACGCCGTGATGGGGTCGACGGGGATCACCATATCCAACAACCTGTTCTCACATCACAACGAGGTGATGCTGCTGGGTCACAGCGACGACTACCTGCCGGACTCGGGGATGCAGGTGACCATCGCCTTCAACCACTTCGGGGAGAAGCTGGTGCAGAGGATGCCACGTTGCAGGAGGGGATACATCCACGTCGTCAACAACGACTACACCCACTGGGAGATGTATGCAATCGGAGGTAGCGGAAACCCCACCATAAACAGCCAGGGGAACAGGTATACGGCGCCGTCTAACCCCTACGCGAAGGAGGTGACCAAGAGGGTGGACACTGGGGAGGGCAAATGGAAAGGCTGGAATTGGAGATCGGAGGGGGACATTATGGTAAATGGAGCTTTCTTCGTCGCCTCCGGAGAAGGGGTTGAGGTTAAGTACGAGAAGGCCTACAGTATCGAGCCTAAGTCCGCCGATCACATTGATCTCCTCATTATGCATGCCGGTGTACTCGGCGTTTCCAGGGACAACAATCTGGGTATGTGGAGTAGAGGGCCCGACGGCGAAGGTGATGAAATCTCAGAGAATGGCCCAGAATACACTGACGATATGTCTGGGACTACAAGGTTGACGACGCATTCGTATGCTGTCACTTTGATATGGTGTTTATTTGGATTCTTGGGGTTGTTATCTTGTCCTAGTATACCCCTAACTACCATTCTATAA 1443 0.5191 MLKTTCILLISLLASFFPLGRAMLNLTLPGQHPDPESVVQEVHRKVNASIARRQMLAESQIGESSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYIVTDSSDDDAVNPKPGTLRYAVIQTQPLWIVFPSNMMIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGEANVRSSPDHYGWRTESDGDAISIFGSKDLWIDHCTLSRCKDGLIDAVMGSTGITISNNLFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDYTHWEMYAIGGSGNPTINSQGNRYTAPSNPYAKEVTKRVDTGEGKWKGWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSIEPKSADHIDLLIMHAGVLGVSRDNNLGMWSRGPDGEGDEISENGPEYTDDMSGTTRLTTHSYAVTLIWCLFGFLGLLSCPSIPLTTIL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2817 480 FunFam Pectate lyase 69 411 - -
Dere01g2817 480 Gene3D - 69 411 IPR012334 -
Dere01g2817 480 SUPERFAMILY Pectin lyase-like 65 396 IPR011050 -
Dere01g2817 480 MobiDBLite consensus disorder prediction 422 444 - -
Dere01g2817 480 SMART amb_all 144 341 IPR002022 -
Dere01g2817 480 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Dere01g2817 480 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Dere01g2817 480 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Dere01g2817 480 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Dere01g2817 480 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Dere01g2817 480 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Dere01g2817 480 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Dere01g2817 480 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Dere01g2817 480 PANTHER PECTATE LYASE 18-RELATED 30 413 IPR045032 GO:0030570
Dere01g2817 480 Pfam Pectate lyase 154 333 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2817 Dere-ChrDere01 43026206 43028440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2817 1 459 Polysaccharide Lyase AT3G53190 74.893 0.0 687