Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2813 ATGCGGATTGTGCCTTCTTCCTCTTCCCCTCTCTCCACTCTCTTTCCTGCGGAGAGAACCCACCCTTCGCATCTCAAAGCTCTGCCTTCGGGATCGAACGGAAAGCCGGAGCAGAATCTGGAAATAATGGATTGCATAGTGGAGCCCCAGACGTCTACCCATGAAATTTCTCATCTAGATGACGGCTCTCTCTCTGAAGTAGGATATGGCCGCCACGGATGTTCACACTATAAAAGGAGATGCAAGATAATAGCACCTTGTTGCAATGAAATATTCAATTGCAGGCATTGCCATAATGAATCTAAGAATTCGATTGAAGTGGACCCTGTTGATCGCCATGATATTCCTCGTCACGATTTGAAGAGAGTTATCTGTTCCTTGTGTAGCACAGAGCAAGATGTTCAACAGATGTGCATTCAATGTGGTGTTTGCATGGGGAAATACTTCTGCTCCAAGTGCAAGTTTTTTGATGATGATGTGTCAAAGAATCAGTACCATTGCGATGAATGTGGTATCTGCAGAATCGGAGGCCAGGAGAATTTTTTTCACTGCAAAAAATGTGGATGTTGCTATTCAATATTATTGAAGGATTCACACCACTGCGTGGAGAAAGCAATGCATCACAATTGCCCAGTTTGCTTTGAGTTTCTTTTCGATACCACAAAAGACATTACTGTATTGCCATGTGGTCACACTATACATCTTGGGTGTGTGAGAGAAATGGAGCAGCATTTCCAGTATTCTTGCCCTGTTTGCTCAAAATCATTTTGTGATATGTCGCGTGTCTGGGAGAGACTGGATCATGAGGTTGCCTCAACACCTATGCCAGAAATGTATCAAAATAAGATGGTTTGGATTCTGTGCAATGATTGTGGGGAAACATCGGAGGTAAGCTTTCACATAGTGGCGCACAAGTGTATTAAATGCAAATCATACAACACCAGACAGACACAAAGTGGACCTGCTTCATCATGCTCATCCAACATTGAAGAGGTGGTGAGATGA 1005 0.4348 MRIVPSSSSPLSTLFPAERTHPSHLKALPSGSNGKPEQNLEIMDCIVEPQTSTHEISHLDDGSLSEVGYGRHGCSHYKRRCKIIAPCCNEIFNCRHCHNESKNSIEVDPVDRHDIPRHDLKRVICSLCSTEQDVQQMCIQCGVCMGKYFCSKCKFFDDDVSKNQYHCDECGICRIGGQENFFHCKKCGCCYSILLKDSHHCVEKAMHHNCPVCFEFLFDTTKDITVLPCGHTIHLGCVREMEQHFQYSCPVCSKSFCDMSRVWERLDHEVASTPMPEMYQNKMVWILCNDCGETSEVSFHIVAHKCIKCKSYNTRQTQSGPASSCSSNIEEVVR 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2813 334 MobiDBLite consensus disorder prediction 315 334 - -
Dere01g2813 334 Pfam Zinc-ribbon 257 315 IPR039512 -
Dere01g2813 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 255 IPR013083 -
Dere01g2813 334 ProSiteProfiles Zinc finger RING-type profile. 210 253 IPR001841 -
Dere01g2813 334 Pfam CHY zinc finger 74 155 IPR008913 GO:0008270
Dere01g2813 334 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 60 319 - -
Dere01g2813 334 ProSiteProfiles Zinc finger CTCHY-type profile. 145 209 IPR017921 -
Dere01g2813 334 MobiDBLite consensus disorder prediction 1 36 - -
Dere01g2813 334 MobiDBLite consensus disorder prediction 1 16 - -
Dere01g2813 334 Gene3D - 281 322 - -
Dere01g2813 334 SMART ring_2 210 252 IPR001841 -
Dere01g2813 334 SUPERFAMILY Zinc hairpin stack 146 203 IPR037275 -
Dere01g2813 334 ProSiteProfiles Zinc finger CHY-type profile. 67 143 IPR008913 GO:0008270
Dere01g2813 334 SUPERFAMILY RING/U-box 209 259 - -
Dere01g2813 334 SUPERFAMILY CHY zinc finger-like 71 145 IPR037274 GO:0008270
Dere01g2813 334 Pfam RING-type zinc-finger 210 250 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2813 Dere-ChrDere01 43000602 43003489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2813 72 319 C2H2 Transcription Factor Family AT3G18290 40.551 8.44e-54 188