Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2811 ATGCTAGCATTTACCATGGGGTGCATCATGCATGGCAACTACCCTGTTATGATTATGAGAAGTGAGAAGTGGAAACCAGCACTTTCTATTCCCAGAGTGTTTGATCTTCAACACACGAAGAACATGCCGATCCGAAGCATTGCCATTGGAAGGCCCCAGGAGGCCACTCACCCGGACACCTTGAAGGCCGGGTTGGCCGAGTTCATCTCCACCCTCATCTTCGTGTTCGCCGGCTCAGGCTCCGGCATGGCCTTCAACAAGCTCACCAACGACGGAGCCACCACCCCTGCCGGCCTCATATCCGCCGCAATTGCTCATGCCTTCGCTCTTTTCGTTGCAGTCTCCGTTGGTTTCAATATTTCCGGTGGCCACGTCAATCCCGCTGTCACCTTCGGCTTCTTCATCGGCGGCAACATCACCTTCTTACGTGGCATCGTCTACTGGATCGCTCAGCTTCTTGGATCCGTCGTTGCCTGCTTGCTCCTTAGGTTCGTCACCGGCGGACTGAGCACCCCAGCTTTCGGACTGTCCGCAGGAGTTGGCGTATGGAACGCCGTCGTGTTTGAGATAGTGATGACATTTGGGTTGGTGTACACAGTGTACGCGACAGCCGTTGATCCCAAGAGGGGCAGTTTGGGAACAATAGCCCCAATCGCGATTGGTTTCATTGTTGGGGCTAACATTTTGGCGGGTGGGGCCTTCGATGGGGCATCCATGAACCCGGCAGTTTCTTTTGGGCCAGCCGTGGTGAGCTGGAGCTGGGACAACCACTGGGTCTACTGGGTTGGGCCACTCATTGGTGGTGGGATTGCTGGGCTCGTCTATGAGTTGTTCTTCATCACCCACACCCATGAGCAGCTCCCCACCGCCGACTACTAG 879 0.5563 MLAFTMGCIMHGNYPVMIMRSEKWKPALSIPRVFDLQHTKNMPIRSIAIGRPQEATHPDTLKAGLAEFISTLIFVFAGSGSGMAFNKLTNDGATTPAGLISAAIAHAFALFVAVSVGFNISGGHVNPAVTFGFFIGGNITFLRGIVYWIAQLLGSVVACLLLRFVTGGLSTPAFGLSAGVGVWNAVVFEIVMTFGLVYTVYATAVDPKRGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWSWDNHWVYWVGPLIGGGIAGLVYELFFITHTHEQLPTADY 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2811 292 ProSitePatterns MIP family signature. 124 132 IPR022357 -
Dere01g2811 292 CDD MIP 62 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2811 292 SUPERFAMILY Aquaporin-like 53 288 IPR023271 -
Dere01g2811 292 Gene3D Glycerol uptake facilitator protein. 45 292 IPR023271 -
Dere01g2811 292 PRINTS Major intrinsic protein family signature 106 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2811 292 PRINTS Major intrinsic protein family signature 188 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2811 292 PRINTS Major intrinsic protein family signature 62 81 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2811 292 PRINTS Major intrinsic protein family signature 143 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2811 292 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2811 292 PRINTS Major intrinsic protein family signature 221 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2811 292 Pfam Major intrinsic protein 55 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere01g2811 292 PANTHER AQUAPORIN-8 47 287 IPR034294 -
Dere01g2811 292 FunFam Probable aquaporin TIP1-1 45 292 - -
Dere01g2811 292 NCBIfam MIP family channel protein 66 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2811 Dere-ChrDere01 42993642 42996079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2811 42 292 Major Intrinsic Protein MIP AT2G36830 85.259 5.77e-154 428