Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2808 ATGAATATTATGGATGCCACGGTGTTGTGCAATAAGGATCAAGCCCAGATCATGAAGGGCAAACGCACCAAGCGTTCCAGGCCACCCTCCCCACTAAGGCTATCCATGGCTTCTACATCCTCCAGTGCCGGAAGAACCAGCACCGACGACAATTCAGGAGAAACAATTGACATGGCTGCAACCTCAACTGATCAACTGAGGGTAACCACAGAAGAAGAGGAGGACATGGCCAACTGTTTGATCCTTCTGGCTCAAGGCCATACCCCTAAGCCCTCCTCAGACAACAACAACGACAACAATAAGGCATCACAGGGGCTATACCTTTATCAGTGCAAGACGTGCGATCGATGCTTTCCTTCTTTCCAAGCGCTCGGTGGACACAGAGCTAGCCACAAGAAACCAAAGCCAAATTCTGAAGGAAAGCTGCAGGCTGTTACGTTTGCGATCGAAGAGGGTGACCGTTATGATCGTTATGATTCCACCAAAAGCACTGCCCTCTCCTTGCAGATATCAACCAGGGCTTGGTATAGCAGCAGCAGCAGTAATACTAGTAAGACCAAAGTTCACGAGTGTTCTATATGCGGGGCTGAGTTCTCGTCTGGGCAAGCCTTGGGGGGCCATATGAGGCGCCACAGAACATTCGTCAACACTTCTACTATGTCTACGAGTACGGGGAATAATTCTGAATTCCAGGAAGCCAAGAAGCCCAAGAGTGTTTTGAAGTTGGATTTGAATCTTCCGGCACCTGACGATGATCACGGAGAGTCCAAGTTCCCCTTTCAGTCTAAAGAAAACGTTCTTGTTTTCTCTGCATCGTCTTTGGTGGATTGCCATTACTGA 840 0.4881 MNIMDATVLCNKDQAQIMKGKRTKRSRPPSPLRLSMASTSSSAGRTSTDDNSGETIDMAATSTDQLRVTTEEEEDMANCLILLAQGHTPKPSSDNNNDNNKASQGLYLYQCKTCDRCFPSFQALGGHRASHKKPKPNSEGKLQAVTFAIEEGDRYDRYDSTKSTALSLQISTRAWYSSSSSNTSKTKVHECSICGAEFSSGQALGGHMRRHRTFVNTSTMSTSTGNNSEFQEAKKPKSVLKLDLNLPAPDDDHGESKFPFQSKENVLVFSASSLVDCHY 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2808 279 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Dere01g2808 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Dere01g2808 279 MobiDBLite consensus disorder prediction 32 56 - -
Dere01g2808 279 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Dere01g2808 279 Pfam C2H2-type zinc finger 109 134 - -
Dere01g2808 279 Pfam C2H2-type zinc finger 188 212 - -
Dere01g2808 279 PANTHER ZINC FINGER PROTEIN ZAT5 59 262 - -
Dere01g2808 279 SMART c2h2final6 109 131 IPR013087 -
Dere01g2808 279 SMART c2h2final6 189 211 IPR013087 -
Dere01g2808 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 211 IPR013087 -
Dere01g2808 279 Gene3D Classic Zinc Finger 108 211 - -
Dere01g2808 279 MobiDBLite consensus disorder prediction 14 56 - -
Dere01g2808 279 SUPERFAMILY beta-beta-alpha zinc fingers 108 211 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2808 Dere-ChrDere01 42983851 42984690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2808 17 279 C2H2 Transcription Factor Family AT5G03510 45.645 3.42e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g2808 zf-C2H2_6 1.1e-12 CL0361