Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2807 ATGGAGAACAGCCACCCCAAAGGAAGACCCTGGTACAGTGATAAGAAGCAGCAAAGCGGAATGGCGGTTCCAGGGAGGCGCAATGGTCTAAACGACGACGACGACGACAACTTCGAAGACGATAACGCCCTCTTTGAAGAAGATGGCCTGTTGGAGCTTGCAGAATCTGATACGCCTCCTCATCTCCGCGACCTAGCCGCCGCCTCCCAGTTTGGTCACCTCGATGATCTCCGCCGCGCTCTAGATACTTTGACCGGGAGTATTGATGAACCAGTGGAAGATGGGGATACGGCTCTACATCTGACCTGCTTATATGGCCATTTTTCTTGTGTCCAGCTACTTCTGGAAAGAGGAGCCAACATCGAGTCTAAGGATGAAGATGGTGCAATTCCCTTACATGATGCTTGTGCAGGAGGCTATGCAGAGATAGTCCAGCTGCTACTTAACAGAGCTGATAATGCAGAGCATATAAGGAGCATGCTTGAATCAGTTGATTCAGAGGGTGATACCCCTCTTCATCATGCTGCAAGAGGCGAGCATGTTGATGTTATTAGGTTATTGCTGTCTCATGGCGCATCTCCCACAAAGACAAACTTATATGGAAAGACCCCAGCAGATTTACCTGATCAGGGCACAGACGCAAGGACACTGCTGGAAGCTACTCGTGCCACATCCGTGGCATCCCGTTAG 690 0.5043 MENSHPKGRPWYSDKKQQSGMAVPGRRNGLNDDDDDNFEDDNALFEEDGLLELAESDTPPHLRDLAAASQFGHLDDLRRALDTLTGSIDEPVEDGDTALHLTCLYGHFSCVQLLLERGANIESKDEDGAIPLHDACAGGYAEIVQLLLNRADNAEHIRSMLESVDSEGDTPLHHAARGEHVDVIRLLLSHGASPTKTNLYGKTPADLPDQGTDARTLLEATRATSVASR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2807 229 ProSiteProfiles Ankyrin repeat region circular profile. 167 193 - -
Dere01g2807 229 ProSiteProfiles Ankyrin repeat profile. 167 199 IPR002110 GO:0005515
Dere01g2807 229 SUPERFAMILY Ankyrin repeat 65 207 IPR036770 -
Dere01g2807 229 MobiDBLite consensus disorder prediction 1 41 - -
Dere01g2807 229 ProSiteProfiles Ankyrin repeat region circular profile. 94 126 - -
Dere01g2807 229 ProSiteProfiles Ankyrin repeat profile. 94 126 IPR002110 GO:0005515
Dere01g2807 229 PANTHER SOWAH (DROSOPHILA) HOMOLOG 167 221 - -
Dere01g2807 229 SMART ANK_2a 167 196 IPR002110 GO:0005515
Dere01g2807 229 SMART ANK_2a 94 123 IPR002110 GO:0005515
Dere01g2807 229 SMART ANK_2a 127 156 IPR002110 GO:0005515
Dere01g2807 229 Pfam Ankyrin repeats (3 copies) 67 152 IPR002110 GO:0005515
Dere01g2807 229 Pfam Ankyrin repeat 168 198 IPR002110 GO:0005515
Dere01g2807 229 Gene3D - 59 226 IPR036770 -
Dere01g2807 229 ProSiteProfiles Ankyrin repeat region circular profile. 127 150 - -
Dere01g2807 229 FunFam BRCA1-associated RING domain protein 1 59 226 - -
Dere01g2807 229 ProSiteProfiles Ankyrin repeat profile. 127 159 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2807 Dere-ChrDere01 42979693 42982001 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2807 42 210 Ion Channels AT2G26650 27.638 2.37e-12 63.9